These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence [TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTTTCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATCGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGCTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATGACAACGATCGTCAACAGCAGCAGCAGCGTGTGAATGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGTGAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGCCACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATTTCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGCTGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCTGTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTGATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGATCCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATATTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAATTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTATGGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCGGCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTATTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAGCAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAATACAAAGTGGTAGCATT] [+] EMBL AL931865 [TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTTTCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATCGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGCTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATGACAACGATCGTCAACAGCAGCAGCAGCGTGTGAATGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAAC ] [+] EMBL BM636291 [ ccgGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGTGAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGCCACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATTTCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGCTGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCTGTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTGATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGATCCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATATTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGG ] [+] EMBL BM622418 [ ccgTTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAATTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTATGGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCGGCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTATTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAGCAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAATACAAAGTGGTAGCATT] consensusID : consensus_5996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AGATCCCGAGGTTATGCTTCGATGGGTGGTAGTGGCCCACCGTCACCAGAACGTGCTCATCAACCGTGCATCTGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACACACACAACAACATCGGTACGACGATACGATACGAACGGTGCTGCGTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATTGACAACGATCGTCAACAGCAGCAGCAGCGGTGTGAATTGGTGGTGGCATCGATCACCAGCATCTTTACGGAAGGCGCTCACGCCCATTGCGATTTGCACCGGTNGCCAAGCAACCCAGGCGAGCAGGCGGATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAAA] [+] EMBL AL693765 [AGATCCCGAGGTTATGCTTCGATGGGTGGTAGTGGCCCACCGTCACCAGAACGTGCTCATCAACCGTGCATCTGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACACACACAACAACATCGGTACGACGATACGATACGAACGGTGCTGCGTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATTGACAACGATCGTCAACAGCAGCAGCAGCGGTGTGAATTGGTGGTGGCATCGATCACCAGCATCTTTACGGAAGGCGCTCACGCCCATTGCGATTTGCACCGGTNGCCAAGCAACCCAGGCGAGCAGGCGGATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAAA] consensusID : consensus_5996#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [CAAGGCCAAGAATCGCCACGAGGTGTNATTCGTGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGAAGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACAGCCACGGACCGGCACAGGAACCAAGCAAGCAGGTCGTGGCGTGGGGGTGTTACAGCGAA] [+] EMBL BX468023 [CAAGGCCAAGAATCGCCACGAGGTGTNATTCGTGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGAAGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACAGCCACGGACCGGCACAGGAACCAAGCAAGCAGGTCGTGGCGTGGGGGTGTTACAGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5996#0 TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTT 60 consensus_5996#1 -----------------------------------------AGATCCCGAGGTTATGCTT 19 consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATC-GAT 119 consensus_5996#1 -CGATGGGTGGTAGTGGCCC-ACCGTCA-CCAGAACGTGCTCATCAACCGTGCATCTGAT 76 consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 GCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGC 179 consensus_5996#1 GCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGC 136 consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 ATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCAT 239 consensus_5996#1 ATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCAT 196 consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 GAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGC-T 298 consensus_5996#1 GAATACACACACAAC----AACATCG-GTACGACGAT-ACGAT-ACGAACGGTGCTGCGT 249 consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACA 358 consensus_5996#1 TCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACA 309 consensus_5996#2 ----------CAAGGCCAAGAATCGCCACGAG-GTGTNATTCGTGGTGGTG--GTCCGCA 47 * ** * * * *** *** ** **** * * * *** ** consensus_5996#0 GTGGTGAT-GACAACG--ATCGTCAACAGCAGCAGCAGCG-------TGTGAAT-GGTGG 407 consensus_5996#1 GTGGTGATTGACAACG--ATCGTCAACAGCAGCAGCAGCGG------TGTGAATTGGTGG 361 consensus_5996#2 ACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGA 107 ** * * * * * * * * **** * ** ** * **** consensus_5996#0 TGGCATCGATCACCAGC-ATCTTTACGAA--GCGCTCACGCCCATTGC--ATCGCCACCG 462 consensus_5996#1 TGGCATCGATCACCAGC-ATCTTTACGGAAGGCGCTCACGCCCATTGCG-ATTTGCACCG 419 consensus_5996#2 AGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACA 167 * * * * ** * ** * * *** *** * ** * consensus_5996#0 CGTGCCAAGCAACC-AGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCC 521 consensus_5996#1 GTNGCCAAGCAACCCAGGCGAGCAGGCGG-ATCGAACGGTGGTGATTCGGGTGGTGGTCC 478 consensus_5996#2 GCCACGGACCGGCACAGG-AACCAAGCA--AGCAGGTCGTGGCG-TGGGGGTGTTA--CA 221 * * * * *** * ** ** * * **** * * ***** * * consensus_5996#0 GCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGT 581 consensus_5996#1 GCAAA------------------------------------------------------- 483 consensus_5996#2 GCGAA------------------------------------------------------- 226 ** * consensus_5996#0 GAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGC 641 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 CACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATT 701 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGC 761 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCT 821 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 GTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTG 881 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 ATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGAT 941 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 CCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATA 1001 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAA 1061 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTAT 1121 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 GGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCG 1181 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 GCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTA 1241 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 TTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAG 1301 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 CAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAAT 1361 consensus_5996#1 ------------------------------------------------------------ consensus_5996#2 ------------------------------------------------------------ consensus_5996#0 ACAAAGTGGTAGCATT 1377 consensus_5996#1 ---------------- consensus_5996#2 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||