These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1441 fasta sequence [CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGTCTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCAAGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCTTCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCATGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATATGTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTGCGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGAGAAGCGTCTACTAACAACGATAAAACGGAACACATAGGCATATTACACATCAAAACCGTGCGCGTGCCAAAATAGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCTGATGTTGTTTGGTGTGTGTATCGCCAATAGAAAATGCCTCGTGTGGCAGACAACGACGCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAACGATGAAGCTAAGTTTTACACATTTTAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGA-GTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCG-AAATCGTGTT-AAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTTAGCCCTGGGGGCGAT] [+] EMBL BX624730 [CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGTCTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCAAGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCTTCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCATGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATATGTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTGCGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGAGAAGCGTCTACTAACAACGATAAAACGGAACACATAGGCATATTACACATCAAAACCGTGCGCGTGCCAAAATAGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCTGATGTTGTTTGGTGTGTGTATCGCCAATAGAAAATGCCTCGTGTGGCAGACAACGACGCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAACGATGAAGCTAAGTTTTACACATTTTAGAAG ] [+] EMBL BX622425 [ GTGTGGCGCCAAAAGAAAATGCCTCGTGTGGCAGACAACGACCCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAAGCCGAGTTGTACACATTTTAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGA GTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCG AAATCGTGTT AAATATGATAAGAAGTTTAATAGAG ] [-] EMBL AL930341 [ TAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTAC AAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAC AAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGAGGGAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAATCGTGTTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTTAGCCCTGGGGGCGAT] consensusID : consensus_6001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACTGGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCAAGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTGTTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAACAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA] [+] EMBL CNS09BOZ [CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACTGGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCAAGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTGTTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAACAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA] consensusID : consensus_6001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [GGCAAGAATCNCGCACGAGNGNGATAAACGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAATATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGTTGTTTGGTGTGTGTGGCGCCAAAAGGAAAATGCCTCGTGTGGCAGACAACGGAACCCCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAANNC] [+] EMBL BX468273 [GGCAAGAATCNCGCACGAGNGNGATAAACGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAATATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGTTGTTTGGTGTGTGTGGCGCCAAAAGGAAAATGCCTCGTGTGGCAGACAACGGAACCCCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAANNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6001#0 CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGT 60 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 CTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCA 120 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 AGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCT 180 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCA 240 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATAT 300 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 GTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTG 360 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 -----------------CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACT 43 consensus_6001#0 CGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGA-GAAGCGTCTACTAA 419 consensus_6001#2 ----------------------------------------GGCAA-GAATCNCGCACGAG 19 consensus_6001#1 GGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCA 103 * * ** consensus_6001#0 CAACGATAAAACGGAACACATAGGCAT-ATTACACATCAAAACCGTGCGCGTGCCAAAAT 478 consensus_6001#2 NGN-GATAAA-CGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAAT 77 consensus_6001#1 AGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTT 163 ** * ** * * * * ***** * * *** * consensus_6001#0 AGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATA 538 consensus_6001#2 ATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATA 137 consensus_6001#1 ATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAG-----ATT 218 * ** * *** *** * * ** * * * ** ** consensus_6001#0 CAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCT--GATGT 596 consensus_6001#2 CAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGT 197 consensus_6001#1 CGTTAAATTCGTG---TGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTA 275 * *** * ** * *** *** * * ** ** * consensus_6001#0 TGTTTGGTGTGTGTATCGCCAAT-------------AG-AAAATGCCTCGTGTGGCAGAC 642 consensus_6001#2 TGTTTGGTGTGTGTGGCGCCAAA-------------AGGAAAATGCCTCGTGTGGCAGAC 244 consensus_6001#1 TTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTG 335 * ***** ** * * ** *** ** *** ** consensus_6001#0 ----AACGACGCC--CC--AGAACTGATTTTCAG-CTTATTTGGCTTGTTTT--CTATTT 691 consensus_6001#2 ----AACGGAACC--CCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTT 298 consensus_6001#1 TTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCC 395 * ** * * *** ** * ** * * *** * * consensus_6001#0 TTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCA-TTATTTTCCTTA 750 consensus_6001#2 TTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTA 358 consensus_6001#1 TCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATG-ATAAGAAGTTTAATAG 454 * ** *** ***** ** ** *** * * * * * * *** * consensus_6001#0 CTTCTTTTACACTACTATGTTGTACA-ACGATGAAGCTAAGTTTTACACATTTTAGAAGC 809 consensus_6001#2 CTTCTTTTACACTACTATGTTGTACA-ATGATGAANNC---------------------- 395 consensus_6001#1 AGAGTTGTAAG--ATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAA 512 ** ** * *** ** *** ** * * consensus_6001#0 GATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAA 869 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 CAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA-------------------- 552 consensus_6001#0 GGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGA 929 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 GACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAG 989 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 CAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGA 1049 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 AAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATA 1109 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 CAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTT 1169 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACA 1229 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAA 1289 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 GAAGAGAGATCCAAAATGGAGTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCA 1349 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 TCGTTCGAAATCGTGTTAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTT 1409 consensus_6001#2 ------------------------------------------------------------ consensus_6001#1 ------------------------------------------------------------ consensus_6001#0 AACATGTGAGGCACGTTAGCCCTGGGGGCGAT 1441 consensus_6001#2 -------------------------------- consensus_6001#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||