These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGACTAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAAGATATTTGTCGTGCAATGTTGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACGGAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGTGCAGGAGTTTAACGACACTTTCTCCGATGCTAAGGAGGAATGGCTAAGGAGTATACCGCTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGGGAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCAGGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC] [+] EMBL BX467963 [GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGACTAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAAGATATTTGTCGTGCAATGTTGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACGGAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGTGCAGGAGTTTAACGACACTTTCTCCGATGCTAAGGAGGAATGGCTAAGGAGTATACCGCTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGGGAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCAGGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC] consensusID : consensus_6002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 687 fasta sequence [CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA-TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG-CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT-GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG] [+] EMBL BM590008 [CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACA ] [+] EMBL BM612567 [ ccGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTCAACAGAGGATACATCCTTTCTCCCCAAAGAACGAGAAGAAGAAGAGATTCTGAGATTATAGATTCTATCTGCTTTCTTACAATTGAAGAAAATGGAGAGTCTGGCAAAAACAACCGACGAATGCAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCAAGCCCGAGTCGGAAGCCAGGAAGCAGTTTCAGTAGACAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGGAGCGTTTCAG ] [+] EMBL BM589904 [ ccgGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG] consensusID : consensus_6002#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [CCGCGGACGCGTGGGCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCAAAACAAGTGTAATTCTTTACCACCATTTCCACTCCTTAACAGATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGT] [+] EMBL BM589303 [CCGCGGACGCGTGGGCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCAAAACAAGTGTAATTCTTTACCACCATTTCCACTCCTTAACAGATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6002#1 ------------------------------------------------------------ consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGA 60 consensus_6002#1 ------------------------------------------------------------ consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 GATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAG 120 consensus_6002#1 ------------------------------------------------------------ consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 CATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAA 180 consensus_6002#1 ------------------------------------------------------------ consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 CAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTA 240 consensus_6002#1 ---------------------CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCA 39 consensus_6002#2 -------------------------------------CCGCGGACGCGTGGG------CA 17 consensus_6002#0 GAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGG-----TCA 295 * *** ** consensus_6002#1 AATTGGTTTGTGCTCTATTATTTT-------GCTCAGCGAAAGTACAAC-----ATTGAC 87 consensus_6002#2 AATTGGTTTGTGCTCTATTATTTT-------GCTCAGCGAAAGTACAAC-----ATTGAC 65 consensus_6002#0 GTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGAC 355 *** * *** ** * *** *** ** ** * * ** ** *** consensus_6002#1 TGCGTTTAACAGAGAATACATCCTT-TCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTG 146 consensus_6002#2 TGCGTTTAACAGAGAATACATCCTT-TCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTG 124 consensus_6002#0 TAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAA 415 * *** * * * ** * * * * ** ***** ** * ***** consensus_6002#1 AGA--TTATAGATCA--------------------------------------------- 159 consensus_6002#2 AGA--TTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCA 182 consensus_6002#0 GATATTTGTCGTGCAATGT-TGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACG 474 ** * * ** consensus_6002#1 ----------------------------------------------ATCTGCTTTCTTAC 173 consensus_6002#2 AAACAAG--TGTAATTCTTTA--CCACCATTTCCACTCCTTAACAGATCTGCTTTCTTAC 238 consensus_6002#0 GAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGT 534 ** * * * * consensus_6002#1 AATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGG 233 consensus_6002#2 AATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGG 298 consensus_6002#0 GCAGGAGTTTAACG-ACACTTTCTCCGATGCTAAGGAGGAATGGCTAA-GGAGTATACCG 592 ** ** * * * *** * * ** * ** ***** ** **** * * consensus_6002#1 CAAAAGCAACCGACGAATGCAACGA-ACAGCTAAAAGCGAGCTCACT---GCAAGATAAG 289 consensus_6002#2 CAAAAGCAACCGACGAATGCAACGA-ACAGCTAAAAGCGAGCTCACT---GCAAGATAAG 354 consensus_6002#0 CTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGG 652 * * *** * * * * * * *** ** * * ** ** ** * ** * consensus_6002#1 CCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGA 349 consensus_6002#2 CCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGA 414 consensus_6002#0 GAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCA 712 * *** * * ** * ** * ** * ** * * consensus_6002#1 GAT----CAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGA 405 consensus_6002#2 GAT----CAAATGACCGGT----------------------------------------- 429 consensus_6002#0 GGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC--- 769 * * **** * * consensus_6002#1 GCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCA 465 consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 ------------------------------------------------------------ consensus_6002#1 GCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGC 525 consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 ------------------------------------------------------------ consensus_6002#1 TAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGT 585 consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 ------------------------------------------------------------ consensus_6002#1 TGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTAT 645 consensus_6002#2 ------------------------------------------------------------ consensus_6002#0 ------------------------------------------------------------ consensus_6002#1 ACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG 687 consensus_6002#2 ------------------------------------------ consensus_6002#0 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||