These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1282 fasta sequence [CCGTAAAAACCGATTTTTGTGAAAAATAGGATATAATTCTTCGTGTACGGTGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAACAAGTGCGTACTCATTCGGGCAGCTAAAGTTGAGCCAAACAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTCGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGCTACACTGCTGGTGGGCTGATGCATGTGTGATCGCGCGCGCATGTGTGTGTGTGTGTTTGTGGTTTTCAACGTCAACGTCGTCGAAGGGCACGGCCACACAAGCCCATCCCAGTGTGAAAAGTGAGTGTGTGAAGAAGTGTACGCGCCTGCTTTGATCCGTGTGCCGTTGGCTGGCAGTGAATGTAGCAAGGTGCTTGTTTTACTCGACGAATGATTCAAGAAAGTCACCTGTGCTGACACACAAACCTCTCCCTTTCAGACACACACACGTACACATACGCGTACGTCCCTTGTTCAGATCGCCTTTTGCTCTGGGTCTTCCCCGCTCTCACGCATCCACCGCGGCTCGGTTCCAGCGGTGAGAGGACAAGGCTTTGTTCACAGACCGATCTGGGAGAGGTCAACGGGAAATACATCCCGCAAGCAAGCAACCAAATAAAAAGATTGTGTGTGTGTGTGTGAACTTCTGCTGCCGTCTTGTCGTGGCCCTGTGAGGATAGGATCCCTCTTCCCGGTTGAGGTGTAGTGTGTTTCTTGTGTGTGTGGGGGCTAGTGTATTTGCGAACCACGGACCTATCTAGGTGTGTGTGCGT] [+] EMBL BM609222 [CCGTAAAAATACATTTTTGTGAAAAATAGGATATAATTCTTCGTGTACGGTGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAACAAGTGCGTACTCATTCGGGCAGCTAAAGTTGAGCCAAACAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTCGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGAC ] [+] EMBL BM606445 [ CCGATTTTTGTGAAAAATAGGATATAATTCTTCGTGTACGGTGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAACAAGTGCGTACTCATTCGGGCAGCTAAAGTTGAGCCAAACAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTCGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGC ] [+] EMBL BM580442 [ CCGATTTTTGTGAAAAATAGGATATAATTCTTCGTGTACGGTGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAACAAGTGCGTACTCATTCGGGCAGCTAAAGTTGAGCCAAACAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTCGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACC ] [+] EMBL BM631175 [ ccgCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGCTACACTGCTGGTGGGCTGATGCATGTGTGATCGCGCGCGCATGTGTGTGTGTGTGTTTGTGGTTTTCAACGTCAACGTCGTCGAAGGGCACGGCCACACAAGCCCATCCCAGTGTGAAAAGTGAGTGTGTGAAGAAGTGTACGCGCCTGCTTTGATCCGTGTGCCGTTGGCTGGCAGTGAATGTAGCAAGGTGCTTGTTTTACTCGACGAATGATTCAAGAAAGTCACCTGTGCTGACACACAAACCTCTCCCTTTCAGACACACACACGTACACATACGCGTACGTCCCTTGTTCAGATCGCCTTTTGCTCTGGGTCTTCCCCGCTCTCACGCATCCACCGCGGCTCGGTTCCAGCGGTGAGAGGACAAGGCTTTGTTCACAGACCGATCTGGGAGAGGTCAACGGGAAATACATCCCGCAAGCAAGCAACCAAATAAAAAGATTGTGTGTGTGTGTGTGAACTTCTGCTGCCGTCTTGTCGTGGCCCTGTGAGGATAGGATCCCTCTTCCCGGTTGAGGTGTAGTGTGTTTCTTGTGTGTGTGGGGGCTAGTGTATTTGCGAACCACGGACCTATCTAGGTGTGTGTGCGT] consensusID : consensus_6004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAAGAAGTGCGTACTCATTCGAGCAGCTAAAGTTGAGCCAAAGTGCGTGCTGCAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCCGGTCCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTGGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGC] [+] EMBL BM575792 [CCGGTCTGACGTGTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAAGAAGTGCGTACTCATTCGAGCAGCTAAAGTTGAGCCAAAGTGCGTGCTGCAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAATCTTAGTGCAAAGTGTGTCCGGTCCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCCCATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTGAGCAAAAAAGAATCACGTTATTTCACACAGTGGTGGAAGAAGTGGGATTGAATTTCAGTAGCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGCTTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGTCCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCCTCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTCATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAACGCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6004#0 CCGTAAAAACCGATTTTTGTGAAAAATAGGATATAATTCTTCGTGTACGGTGTCTGACGT 60 consensus_6004#1 -----------------------------------------------CCG-GTCTGACGT 12 * * ********* consensus_6004#0 GTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAACAAGTGCGTACTCATTCGGGCAG 120 consensus_6004#1 GTGTTTGCGAGTGGGGATTAAGAATATTTGTGTTTAAGAAGTGCGTACTCATTCGAGCAG 72 ************************************* ***************** **** consensus_6004#0 CTAAAGTTGAGCCAAA----------CAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAAT 170 consensus_6004#1 CTAAAGTTGAGCCAAAGTGCGTGCTGCAAAGAGGAAAAAACGAAGCTCAGCGCTGTGAAT 132 **************** ********************************** consensus_6004#0 CTTAGTGCAAAGTGTGTC------GGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCC 224 consensus_6004#1 CTTAGTGCAAAGTGTGTCCGGTCCGGTCCAAACGTCAAGTTCCCTCGAGAACACGCATCC 192 ****************** ************************************ consensus_6004#0 CATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTG 284 consensus_6004#1 CATACGCGACAGGCAACGATTGATCGAATTGGCTGGTGAGGGCCCCGTGCTGTGTCAGTG 252 ************************************************************ consensus_6004#0 AGCAAAAAAGAATCACGTTATTTCACACAGTGGTCGAAGAAGTGGGATTGAATTTCAGTA 344 consensus_6004#1 AGCAAAAAAGAATCACGTTATTTCACACAGTGGTGGAAGAAGTGGGATTGAATTTCAGTA 312 ********************************** ************************* consensus_6004#0 GCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGC 404 consensus_6004#1 GCAAGTGGCGCATTTGATCAACGGTGCTGGTTTTATAACCCTCTGTGTGGATACGTGTGC 372 ************************************************************ consensus_6004#0 TTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGT 464 consensus_6004#1 TTATTAGGCCCGTCAACGAAAAGTACGCAATACAAAACACACCCCAGCAGAGCACGTCGT 432 ************************************************************ consensus_6004#0 CCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCC 524 consensus_6004#1 CCGTTCTGGTGTGAAAAAGTGTGTGCCCTTTCTTTCGCAGCGAGAAAACGGCGCATCGCC 492 ************************************************************ consensus_6004#0 TCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTC 584 consensus_6004#1 TCCAACCATTCCTCGAGAGTGTTCTTCGGTGCAGGGCTGTCGGTGAAAAGAAGAATTCTC 552 ************************************************************ consensus_6004#0 ATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAAC 644 consensus_6004#1 ATTGTGAGGCGCAAGAAGCGCAATCAGCACAACAGCCGCAGTGAGAGTGAGCATTGAAAC 612 ************************************************************ consensus_6004#0 GCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGCTACACTGCTGGTGGG 704 consensus_6004#1 GCAGGAGCAAAACCAATAGTCAAGTTGTCCTCGACAAACGTCCGC--------------- 657 ********************************************* consensus_6004#0 CTGATGCATGTGTGATCGCGCGCGCATGTGTGTGTGTGTGTTTGTGGTTTTCAACGTCAA 764 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 CGTCGTCGAAGGGCACGGCCACACAAGCCCATCCCAGTGTGAAAAGTGAGTGTGTGAAGA 824 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 AGTGTACGCGCCTGCTTTGATCCGTGTGCCGTTGGCTGGCAGTGAATGTAGCAAGGTGCT 884 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 TGTTTTACTCGACGAATGATTCAAGAAAGTCACCTGTGCTGACACACAAACCTCTCCCTT 944 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 TCAGACACACACACGTACACATACGCGTACGTCCCTTGTTCAGATCGCCTTTTGCTCTGG 1004 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 GTCTTCCCCGCTCTCACGCATCCACCGCGGCTCGGTTCCAGCGGTGAGAGGACAAGGCTT 1064 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 TGTTCACAGACCGATCTGGGAGAGGTCAACGGGAAATACATCCCGCAAGCAAGCAACCAA 1124 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 ATAAAAAGATTGTGTGTGTGTGTGTGAACTTCTGCTGCCGTCTTGTCGTGGCCCTGTGAG 1184 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 GATAGGATCCCTCTTCCCGGTTGAGGTGTAGTGTGTTTCTTGTGTGTGTGGGGGCTAGTG 1244 consensus_6004#1 ------------------------------------------------------------ consensus_6004#0 TATTTGCGAACCACGGACCTATCTAGGTGTGTGTGCGT 1282 consensus_6004#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||