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Anopheles gambiae
cluster # 6011 cluster # 6011       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6011#0 length = 1028 sequences # 4  
consensus_6011#1 length = 973 sequences # 1  

consensusID : consensus_6011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1028
fasta sequence
                              [GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTC-CGATGGCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG-CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG-GCGGTCGACTATCATCGGGC-GGGGGCCTCCGGCTAGC-ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA-CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG-CCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG-TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT]

[+] EMBL AGA281227            [GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTCTCGATGGCGGGCGGCGGCGGTTC GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG GCGGTCGACTATCATCGGGCGGGGGGCCTCCGGCTAGC ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AL692231             [                                                                        c gaggttaGGGCGGCGGCGGTTCTGAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCGTCTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCGNGCGGTCGACTATCATCGGGC GGGGGCCTCCGGCTATCTACACCCACGGACGGTGCGCCCAGCGAGGGCCGACGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG CCGAC                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA282284            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATCGC CTTACGTAATGTATCCCTCGAATGTGCCGGTGTT TGCGGGCGG TGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG CGCGACCGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCT                                                               ]
[-] EMBL AGA282849            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGTGCTCTCGGGATGGGGGGGATATTTTGTGTTGTTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT]


>consensus_6011#0 GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGA TGAGATTAAGTTCCGATGGCGGGCGGCGGCGGTTCGAACGGTGGGTACGCCGTGGTACGA CCGCAAAGCCTCTCGCTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGC GGCGGTCGACTATCATCGGGCGGGGGCCTCCGGCTAGCACACCCACCGACGGTGCGCCCA GCGAGGGCCGCCGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTA CATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGC TGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTG ACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGC TCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCC GGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACC AAAGAGGATGAGCGGATGACGGCCGCGACGAAGCTGGGCCGTACGCCGAGCGACACCGGC GGCCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACA GTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGC TCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTGTTTTTTTTTTCTCGGGGAGGGTT TAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAAT GATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATC AGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGT GTGTGCGT



consensusID : consensus_6011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 973
fasta sequence
                              [GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC]

[+] EMBL AL692270             [GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC]


>consensus_6011#1 GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTC TCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTC GACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCC CAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGAC CGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCT TGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGG GAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAA CCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGA AAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGA AGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCC GCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNC ANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAG TTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTT ATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCA CATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCA ATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGA ATGCCGTGAAGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6011#0      GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGA 60
consensus_6011#1      ------------------------------------------------------------
                                                                                  

consensus_6011#0      TGAGATTAAGTTCCGATG-GCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTAC 118
consensus_6011#1      --------------GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTAC 46
                                    ** *     ************* ************* ***** ***

consensus_6011#0      GACCGCAAAGCCTCTCG-CTCAG-CATGAACAGCATGG-GTAGCGATAATTCCGAGCAGA 175
consensus_6011#1      GACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGA 106
                      ***************** ***** ************ * *********************

consensus_6011#0      GCAGCGG--CGGTCGACTATCATCGGGCGGGGG---CCTCCGGCTAGC-ACACCCACCG- 228
consensus_6011#1      GCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGT 166
                      ***** *  *********************  *   ********** * ******** * 

consensus_6011#0      -ACGGTGCGC---CCAGCGAGGGC-----CGCCGTCTG--TCGCACAGC-AAATC-GTGG 275
consensus_6011#1      GACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTG 226
                       ** *** **   *****   **      * * ****     ******* ***** ** *

consensus_6011#0      ---CGAAAG-GGACCG-AGAAC-GAGAACTACAT-GGTGCC-GCATCG---CCCGTCCCA 324
consensus_6011#1      GCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCA 286
                         ****** ****** ***** *********** ****** *****    ** ******

consensus_6011#0      TCAGC-GAAGAGCT-GCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGG 382
consensus_6011#1      TCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAG 346
                      ***** ******** *********     * * *   *     **   *  *** **  *

consensus_6011#0      TGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCA 442
consensus_6011#1      GACAAA-GATNAGGGGAACAGCG--TACAGNTACAG-GGTTGGCAGCTATAAAAACCCCG 402
                        *     *     * * ** **    * * * *** *  *******    * *   ** 

consensus_6011#0      CAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGC 502
consensus_6011#1      GCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAA 462
                           *  **   **     * *   *  * *      **         *** **     

consensus_6011#0      AGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAG 562
consensus_6011#1      GNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCC 522
                         **   * ** * * **   * *   **** *  **   *     *   *    *   

consensus_6011#0      AGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG 622
consensus_6011#1      AATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCA 582
                      * **     * * * **  ***          **   ****    *   *     * *  

consensus_6011#0      CCGCGACGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCGACACCGCACCTTGTCAC 682
consensus_6011#1      CCCGGAGGNGTCNTACCCGCAT--TGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGG 640
                      **  ** *   *    *** *    *   *  ***  ***  **   *  *  ***    

consensus_6011#0      CTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGG 742
consensus_6011#1      AGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTG-GCTTACANCNTTAAACAGGG 699
                        *  *      ** **       **      *  ** * *   ***   * *   ****

consensus_6011#0      CTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGG 802
consensus_6011#1      GTNTAACA----CATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTT 755
                       *  * *       *   *   *  ** *      ** ** **        *  ****  

consensus_6011#0      GGATTTTTTGTGTTGTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAAC 862
consensus_6011#1      TGACACCCAGGGGGGATTGGGATTTATCATG--GGACCANTGTGGCGGC----CAGGTGG 809
                       **      * *  * **    *** **  *  **      * **** *    ***    

consensus_6011#0      GACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGT 922
consensus_6011#1      GCGTGTGCCCATG----TGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTAT--GT 863
                      *   ** * ***     *        *****   * ** **   * * * *  * *  **

consensus_6011#0      GTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTAT 982
consensus_6011#1      CACACTGCGTAGACAGGAGTGGG--CAGGGCACTTAGCAATCGGGCCCAACCAACCGAAA 921
                           *****   *  * ** **   **  * *  * ** **      ** ** * * * 

consensus_6011#0      ACAAAGCGAAAACCAACGAAA-TAAAGATATATTTCTGTGTGTGCGT------ 1028
consensus_6011#1      ACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGC-CGTGAAGGC 973
                      *****     *   *** ***  * **   **  * **  **  ***      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)