These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1028 fasta sequence [GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTC-CGATGGCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG-CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG-GCGGTCGACTATCATCGGGC-GGGGGCCTCCGGCTAGC-ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA-CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG-CCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG-TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT] [+] EMBL AGA281227 [GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTCTCGATGGCGGGCGGCGGCGGTTC GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG GCGGTCGACTATCATCGGGCGGGGGGCCTCCGGCTAGC ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGT ] [+] EMBL AL692231 [ c gaggttaGGGCGGCGGCGGTTCTGAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCGTCTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCGNGCGGTCGACTATCATCGGGC GGGGGCCTCCGGCTATCTACACCCACGGACGGTGCGCCCAGCGAGGGCCGACGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG CCGAC ] [-] EMBL AGA282284 [ AATCGC CTTACGTAATGTATCCCTCGAATGTGCCGGTGTT TGCGGGCGG TGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG CGCGACCGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCT ] [-] EMBL AGA282849 [ TCGTGCTCTCGGGATGGGGGGGATATTTTGTGTTGTTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT] consensusID : consensus_6011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence [GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC] [+] EMBL AL692270 [GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6011#0 GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGA 60 consensus_6011#1 ------------------------------------------------------------ consensus_6011#0 TGAGATTAAGTTCCGATG-GCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTAC 118 consensus_6011#1 --------------GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTAC 46 ** * ************* ************* ***** *** consensus_6011#0 GACCGCAAAGCCTCTCG-CTCAG-CATGAACAGCATGG-GTAGCGATAATTCCGAGCAGA 175 consensus_6011#1 GACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGA 106 ***************** ***** ************ * ********************* consensus_6011#0 GCAGCGG--CGGTCGACTATCATCGGGCGGGGG---CCTCCGGCTAGC-ACACCCACCG- 228 consensus_6011#1 GCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGT 166 ***** * ********************* * ********** * ******** * consensus_6011#0 -ACGGTGCGC---CCAGCGAGGGC-----CGCCGTCTG--TCGCACAGC-AAATC-GTGG 275 consensus_6011#1 GACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTG 226 ** *** ** ***** ** * * **** ******* ***** ** * consensus_6011#0 ---CGAAAG-GGACCG-AGAAC-GAGAACTACAT-GGTGCC-GCATCG---CCCGTCCCA 324 consensus_6011#1 GCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCA 286 ****** ****** ***** *********** ****** ***** ** ****** consensus_6011#0 TCAGC-GAAGAGCT-GCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGG 382 consensus_6011#1 TCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAG 346 ***** ******** ********* * * * * ** * *** ** * consensus_6011#0 TGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCA 442 consensus_6011#1 GACAAA-GATNAGGGGAACAGCG--TACAGNTACAG-GGTTGGCAGCTATAAAAACCCCG 402 * * * * ** ** * * * *** * ******* * * ** consensus_6011#0 CAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGC 502 consensus_6011#1 GCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAA 462 * ** ** * * * * * ** *** ** consensus_6011#0 AGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAG 562 consensus_6011#1 GNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCC 522 ** * ** * * ** * * **** * ** * * * * consensus_6011#0 AGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG 622 consensus_6011#1 AATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCA 582 * ** * * * ** *** ** **** * * * * consensus_6011#0 CCGCGACGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCGACACCGCACCTTGTCAC 682 consensus_6011#1 CCCGGAGGNGTCNTACCCGCAT--TGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGG 640 ** ** * * *** * * * *** *** ** * * *** consensus_6011#0 CTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGG 742 consensus_6011#1 AGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTG-GCTTACANCNTTAAACAGGG 699 * * ** ** ** * ** * * *** * * **** consensus_6011#0 CTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGG 802 consensus_6011#1 GTNTAACA----CATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTT 755 * * * * * * ** * ** ** ** * **** consensus_6011#0 GGATTTTTTGTGTTGTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAAC 862 consensus_6011#1 TGACACCCAGGGGGGATTGGGATTTATCATG--GGACCANTGTGGCGGC----CAGGTGG 809 ** * * * ** *** ** * ** * **** * *** consensus_6011#0 GACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGT 922 consensus_6011#1 GCGTGTGCCCATG----TGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTAT--GT 863 * ** * *** * ***** * ** ** * * * * * * ** consensus_6011#0 GTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTAT 982 consensus_6011#1 CACACTGCGTAGACAGGAGTGGG--CAGGGCACTTAGCAATCGGGCCCAACCAACCGAAA 921 ***** * * ** ** ** * * * ** ** ** ** * * * consensus_6011#0 ACAAAGCGAAAACCAACGAAA-TAAAGATATATTTCTGTGTGTGCGT------ 1028 consensus_6011#1 ACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGC-CGTGAAGGC 973 ***** * *** *** * ** ** * ** ** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||