These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 679 fasta sequence [CCGCCCACGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA-GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATATAAAGCAGGGTGGTA] [+] EMBL BM583219 [CCGCCCACGCGTCCGCAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATATAAAGC ] [+] EMBL BM600263 [ cCGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCG ] [+] EMBL BM642613 [ cCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATAT AAGCAGGGTGGTA] [+] EMBL BM632010 [ ccgTGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATGCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCAGGGCATATCAGTCTTATGGAGGCGTTACGGAACAGAT ] consensusID : consensus_6013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCGCGCTGTTTGTAAATGTCTGCCATTGACCAAATCGCTTACCGAATCAGCTGTTTCACTTTCATCCGAATGTTGAGCTCAGCTCAAAGCGTAGATTATAGTAACTATTATTAGGCTGTCCTATCCTTTTCAAGGCACCGTGCACAACACCCGTGCCAGTAGTGCGAAAGCAATAAAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTGTGGTGGGCTGGTTTGTTAACATTCACCAACGCGAGCGAGTGCAATCGGGTAGGGGACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCGGTGGCCAGCCGCTGCACGCGAACGATTCCAGTGGCGATGCGTACTACTTCAGCCCTTGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAATGANTGCTNANAANGATATACGCTTTGCAAGTATGACGCCGTACACCACCAGCTGNTACGGTTGGGTGAGCTGAAGGAAACGCAG] [+] EMBL BX619649 [ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCGCGCTGTTTGTAAATGTCTGCCATTGACCAAATCGCTTACCGAATCAGCTGTTTCACTTTCATCCGAATGTTGAGCTCAGCTCAAAGCGTAGATTATAGTAACTATTATTAGGCTGTCCTATCCTTTTCAAGGCACCGTGCACAACACCCGTGCCAGTAGTGCGAAAGCAATAAAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTGTGGTGGGCTGGTTTGTTAACATTCACCAACGCGAGCGAGTGCAATCGGGTAGGGGACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCGGTGGCCAGCCGCTGCACGCGAACGATTCCAGTGGCGATGCGTACTACTTCAGCCCTTGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAATGANTGCTNANAANGATATACGCTTTGCAAGTATGACGCCGTACACCACCAGCTGNTACGGTTGGGTGAGCTGAAGGAAACGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6013#0 CCGCCCACGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCG 60 consensus_6013#1 ----------------ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCG 44 * * * *** ** ** ** * ** * * **** consensus_6013#0 CACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCAT 120 consensus_6013#1 CGCTGTTTGTAAATGT-CTGCCATTGACCAAATCGC-TTACCGAATCAGCTGTTTCAC-T 101 * ** ** * ** *** ** * * ** ** * * * * * * * * * consensus_6013#0 TCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATA 180 consensus_6013#1 TTCATCCGAATGT--TGAGCTCAGCT--CAAAGCGTAGATTATAGTAACTATTATTAGGC 157 * ***** **** ** ** **** * * * * * * ** consensus_6013#0 TCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGAT 240 consensus_6013#1 TGTCCTA---TCCTTTTCAAGGCACCGTGCACAACACCCGTGC-CAGTAGTGCGAAAG-- 211 * ** * ***** *** * ** **** *** * * ** * **** * consensus_6013#0 CGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAG 300 consensus_6013#1 CAATA--AAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTG 269 * ** **** *** * * * * * ** * * * * * consensus_6013#0 TAA-AACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTG--- 356 consensus_6013#1 TGGTGGGCTGGTTTGTTAAC--ATTCACCAACGCGAGCGA---GTGCAATCGGGTAGGGG 324 * ** * *** ** ** ** *** ** ** * * consensus_6013#0 -CATTTACTGCGTATTGTACCCCATCCCGGGCAT-AGCTCAAGTGCCAACAACTACGATA 414 consensus_6013#1 ACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCG 384 * ** ***** ** *** * * *** ** * * * *** ** * * consensus_6013#0 TCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCAC 474 consensus_6013#1 GTGGCCAGCCGCTGCACGCGAACGATTCCAG---TGGCGATGCG-TACTACTTCAGCCCT 440 * ** * ** ** ** ** * **** * * * ** * consensus_6013#0 TACCGGAACA-GGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGG 533 consensus_6013#1 TGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAAT-GANTG 499 * ** * *** * * ** ** ** * ** ** * * * consensus_6013#0 ATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTG 593 consensus_6013#1 CTNANAANGA-TATACGCTTTGCAAGTATGACGCCGTACACCACCAGC-TGNTACGGTTG 557 * * ** ** * * * * * * * * * * ** * * * ** consensus_6013#0 AATCAGCAGGAGTGTAACCAGGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTT 653 consensus_6013#1 GGTGAGCTGAAGGAAACGCAG--------------------------------------- 578 * *** * ** * *** consensus_6013#0 TGTGCAGGATATAAAGCAGGGTGGTA 679 consensus_6013#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||