These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1383 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGAGCGATAGTGGGAAATT--AAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACGCACATGTAACATCCCC----CCGCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACCAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGCGTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTTTAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGTATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAGTGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGGGTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAAGGATTGTGCCTCA] [+] EMBL BM583863 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCC ] [+] EMBL BM650280 [ ccgcggacgCGTGGGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGCTGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATC ] [+] EMBL BM619630 [ ccgGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGTACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCAAATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGGTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGGGGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGAGCGATAGTGGGAAATTTAAAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACGCACATGTAACATCCCC CCGCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACCAGAACCAGAG ] [+] EMBL BM627190 [ ccgGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGCGCGATAGTGGGAAATT AAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGGAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACCAACATGTAACATCCCCCCCTCCCCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACAAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGCGTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTTTAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGTATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAGTGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGGGTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAAGGATTGTGCCTCA] consensusID : consensus_6014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTTGATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGATTTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGTGTCGGATCGGATTTGTACATTTTTAAATGAA] [+] EMBL BX617153 [CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTTGATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGATTTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGTGTCGGATCGGATTTGTACATTTTTAAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6014#0 ------------------------------------------------------------ consensus_6014#1 CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTT 60 consensus_6014#0 ------------------------------------------------------------ consensus_6014#1 GATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGAT 120 consensus_6014#0 ----------CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTT 50 consensus_6014#1 TTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTT 180 * ** **** ** * *********************** consensus_6014#0 CTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATC 110 consensus_6014#1 CTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATC 240 ************************************************************ consensus_6014#0 GAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAA 170 consensus_6014#1 GAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAA 300 ************************************************************ consensus_6014#0 GATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATG 230 consensus_6014#1 GATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATG 360 ************************************************************ consensus_6014#0 TCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGA 290 consensus_6014#1 TCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGA 420 ************************************************************ consensus_6014#0 ACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATAT 350 consensus_6014#1 ACCAGCGTGTGTCGGATCGGATTTGTAC----ATTTTTA-AATGAA-------------- 461 ********* * * * * *** ** **** ** * consensus_6014#0 CTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATT 410 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 TCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACAC 470 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 AGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACC 530 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 ACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGG 590 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 AGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAAC 650 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 AACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGA 710 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 TTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAA 770 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGG 830 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GAGAAAGACGCACAAGAGCGATAGTGGGAAATTAAAAAAAAATGCAGAAGAATATGGACT 890 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGC 950 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 AATTAGGAGCCGTTGCTTACGCACATGTAACATCCCCCCGCCCATCACCCCACATTCTGA 1010 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 CCTTACGAGTTTTCCACTCTGACCAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGC 1070 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTT 1130 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 TAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGT 1190 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 ATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAG 1250 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 TGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGG 1310 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAA 1370 consensus_6014#1 ------------------------------------------------------------ consensus_6014#0 GGATTGTGCCTCA 1383 consensus_6014#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||