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Anopheles gambiae
cluster # 6014 cluster # 6014       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6014#0 length = 1383 sequences # 4  
consensus_6014#1 length = 461 sequences # 1  

consensusID : consensus_6014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1383
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGAGCGATAGTGGGAAATT--AAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACGCACATGTAACATCCCC----CCGCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACCAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGCGTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTTTAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGTATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAGTGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGGGTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAAGGATTGTGCCTCA]

[+] EMBL BM583863             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM650280             [                                                                                                    ccgcggacgCGTGGGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCATTCCGCACTGGCTGGCTGGCGCTGGCATCATGATCGATGAATCGATCATTTCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM619630             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgGACGGGACACACAGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGTACATTCAGCAAACGACCACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGAAAAAATCCCATTTTTCTGCTACTCAAATAGCACCGCGCGCCGCGCACAACAACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGGTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGGGGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGAGCGATAGTGGGAAATTTAAAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACGCACATGTAACATCCCC    CCGCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACCAGAACCAGAG                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM627190             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACGCACAAGCGCGATAGTGGGAAATT  AAAAAAAAATGCAGAAGAATATGGACTGACTATACATCTCCCGCTAGACCACAGGAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGCCGTTGCTTACCAACATGTAACATCCCCCCCTCCCCCCATCACCCCACATTCTGACCTTACGAGTTTTCCACTCTGACAAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGCGTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTTTAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGTATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAGTGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGGGTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAAGGATTGTGCCTCA]


>consensus_6014#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTTCTATCCTCAA AACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTC CTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACG CAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGA AGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGC ATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATATCTGTAACGCA TTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATTTCACATCGCA ATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACACAGGGATCATA GTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACCACGCACGCAA TAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGGAGTGCATCGA AAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAACAACCGTTTTC GTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGATTCGCGATTG AGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAAGTGAGCTATC GATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGGGAGAAAGACG CACAAGAGCGATAGTGGGAAATTAAAAAAAAATGCAGAAGAATATGGACTGACTATACAT CTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGCAATTAGGAGC CGTTGCTTACGCACATGTAACATCCCCCCGCCCATCACCCCACATTCTGACCTTACGAGT TTTCCACTCTGACCAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGCGTACAAAATT TGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTTTAATTCTGAG TTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGTATGGGCAGGA CTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAGTGATATATAA ACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGGGTAGAAAGTC CTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAAGGATTGTGCC TCA



consensusID : consensus_6014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence
                              [CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTTGATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGATTTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGTGTCGGATCGGATTTGTACATTTTTAAATGAA]

[+] EMBL BX617153             [CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTTGATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGATTTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTTCTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATCGAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAAGATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATGTCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGAACCAGCGTGTGTCGGATCGGATTTGTACATTTTTAAATGAA]


>consensus_6014#1 CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTT GATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGAT TTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTT CTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATC GAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAA GATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATG TCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGA ACCAGCGTGTGTCGGATCGGATTTGTACATTTTTAAATGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6014#0      ------------------------------------------------------------
consensus_6014#1      CCCGCCCCTCTGGAGTGCATCGAAAAAAAAAAACGTGTGGTGAAACAGAGGGGCAATTTT 60
                                                                                  

consensus_6014#0      ------------------------------------------------------------
consensus_6014#1      GATTTTTTAAACAAACACGATAAAAAACGCCATCTGTTCTGGCCCGGTTCTCAGGAAGAT 120
                                                                                  

consensus_6014#0      ----------CCGCCCACGCGTCCGCCCACGCGTCCGGCGGCACGAGCGGTGCATTTTTT 50
consensus_6014#1      TTTTTCGTTTTGGTCCGTAGTTCCGTAGACACTCGGTGCGGCACGAGCGGTGCATTTTTT 180
                                  * **     ****   ** *     ***********************

consensus_6014#0      CTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATC 110
consensus_6014#1      CTATCCTCAAAACGCAAAACATTCTTTTTATTGAGCAGTGAATCTGGTTGGTGCTAAATC 240
                      ************************************************************

consensus_6014#0      GAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAA 170
consensus_6014#1      GAGTGATTTCCTGCTGCGTGACTTATGTCCTGCGTCTGTCGCTTTTTGTTGTTATTCCAA 300
                      ************************************************************

consensus_6014#0      GATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATG 230
consensus_6014#1      GATTTTTACGCAAGCTTACGTGAGTGGGTGGATGGAATTTCGTGTGCAGCTTCTTGTATG 360
                      ************************************************************

consensus_6014#0      TCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGA 290
consensus_6014#1      TCCGGTGTGAAGATTTAATTTTAATTTCTCGTTTTGTTTTGCATACCGGATCCAACATGA 420
                      ************************************************************

consensus_6014#0      ACCAGCGTGCATGCGTATGTGTGTGTGGCACAATGTTTACAACGGTTTGCGTGTCTATAT 350
consensus_6014#1      ACCAGCGTGTGTCGGATCGGATTTGTAC----ATTTTTA-AATGAA-------------- 461
                      *********  *  *   *  * ***      ** **** ** *                

consensus_6014#0      CTGTAACGCATTCCGCACTGGCTGGCTGGCGATGGCATCATGATCGATGAATCGATCATT 410
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      TCACATCGCAATGTATGAGCCCCATTCTCGTTCCTGTTTGTACAGATAGACGGGACACAC 470
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      AGGGATCATAGTAAACTGCGCATTGCTTCGTCACACAATAAGCACATTCAGCAAACGACC 530
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      ACGCACGCAATAAATGCCGCGATGCCATGGACGATCGTCGTTGATCGCCCGCCCCTCTGG 590
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      AGTGCATCGAAAAAATCCCATTTTTCTGCTACTCGCATAGCACCGCGCGCCGCGCACAAC 650
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      AACCGTTTTCGTTTTCTGTTTCGCGCAAAATAACATAACATAAATCATCGTTCTAGTTGA 710
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      TTCGCGATTGAGCATATCGAGTTATGCAAATGAGATAGCATTAGTTGTAGTAGAAAAGAA 770
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GTGAGCTATCGATCAGAGATGCTCCGCCAGGGCCAGGAAAACTTCCCTACCGGGTACCGG 830
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GAGAAAGACGCACAAGAGCGATAGTGGGAAATTAAAAAAAAATGCAGAAGAATATGGACT 890
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GACTATACATCTCCCGCTAGACCACAGCAAGGTACGTCAGAGCAGAATAAAAGTGAAAGC 950
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      AATTAGGAGCCGTTGCTTACGCACATGTAACATCCCCCCGCCCATCACCCCACATTCTGA 1010
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      CCTTACGAGTTTTCCACTCTGACCAGAACCAGAGACATTGAAACACCCTGCGAAGTGTGC 1070
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GTACAAAATTTGTGAAAAAGAACCAGTGGGTTACTACCCCTCGCCTTTGGCTGGAATCTT 1130
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      TAATTCTGAGTTTCCTTTCGTTTTACCTTTTGAGGGAATATAAAATGCATATTGAGCTGT 1190
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      ATGGGCAGGACTGTAGCAAAAAGTATTTGTAGTAGTGCATTAATTCTCGTTTTTAAATAG 1250
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      TGATATATAAACACCGTTTTTTGTGACAATAATGAAGGCAAGTGAGGGCTAACGACATGG 1310
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GTAGAAAGTCCTAGCTATAGTGTATGGATTGTTCTTTGTAGCAGCATTGAGCAAAAAAAA 1370
consensus_6014#1      ------------------------------------------------------------
                                                                                  

consensus_6014#0      GGATTGTGCCTCA 1383
consensus_6014#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)