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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence
[CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATATATACGAGTCGCTNTCACATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAAATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTTTGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCTTGGGCCANACAAACGTTTAACGCACCGGACGGTACCGCCCTACCTGAAATTGGCGCCTCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAATTGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGGACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCTAACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAACATATAGTTACCCCAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACATCACAAAGTCACCACGCTTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACTTGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCACAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACACTACCAACCATCTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCACATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCAC]
[+] EMBL AL693690 [CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATATATACGAGTCGCTNTCACATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAAATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTTTGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCTTGGGCCANACAAACGTTTAACGCACCGGACGGTACCGCCCTACCTGAAATTGGCGCCTCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAATTGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGGACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCTAACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAACATATAGTTACCCCAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACATCACAAAGTCACCACGCTTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACTTGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCACAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACACTACCAACCATCTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCACATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCAC]
consensusID : consensus_6017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence
[TTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTTTGCAGCCCTCTCTTATTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGAATGGACACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAATCCGATTGATAATAATTATTCCAACACGATTACTGCTACATTTCACCTTACACAGGGACAGGACAGACGT-AAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTTAACCTCGGCCTCTCTCGTTTCTCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTAGAAGAAAATTAACTACACATCACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAGCGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCTGTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTTGCATTTGCAAAACTGTACATTTCGTTTGCTGCTTGCATGCTACTACGATGCGCCTCGCGCACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTTTGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGCGTGTCTCTAGCTTGCTTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCCTTGAATCATTTGATTACTAAACAAGTTTA]
[-] EMBL AL932363 [TTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTTTGCAGCCCTCTCTTATTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGAATGGACACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAATCCGATTGATAATAATTATTCCAACACGATTACTGCTACATTTCACCTTACACAGGGACAGGACAGACGT AAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTTAACCTCGG ]
[-] EMBL BX605009 [ ACTGCTACATTTCACCTTACACAGGGACAGGACAGACGTAAAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTCTCTCTTTCCCTCTCTCGTTTCTCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTAGAAGAAAATTAACTACACATCACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAGCGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCTGTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTTGCATTTGCAAAACTGTACATTTCGTTTGCTGCTTGCATGCTACTACGATGCGCCTCGCGCACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTTTGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGCGTGTCTCTAGCTTGCTTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCCTTGAATCATTTGATTACTAAACAAGTTTA]
consensusID : consensus_6017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence
[AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAAATCTACACTGTTTTTCTTGGGGGAGGAGAGTGGGGGGGTGGGGGCTGTTCTGGAGGGAAGGGTTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGGGCGGCGCGCTGTGGCTATTACTATTACTGAGAACCCAACAGAACTCTTCCTACCTGCTATCTTTTTG--TTTTGTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGG----GGGGGG-GGTCTGTATTGGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGGTGACTTAGAGAGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTAGTAGTGTATGTAGAGGCTCGAACTAACTTCGCTGCCAACAAACGTTTACCACCGTCGTCGCCTACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCTCTCTTGTTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGCGG]
[-] EMBL BM608531 [AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAAATCTACACTGTTTTTCTTGGGGGAGGAGAGTGGGGGGGTGGGGGCTGTTCTGGAGGGAAGGGTTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGGGCGGCGCGCTGTGGCTATTACTATTACTGAGAACCCAACAGAACTCTTCCTACCTGCTATCTTTTTG TTTTGTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGG GGGGGG GGTCTGTATTGGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGG ]
[-] EMBL BM589851 [ GGGCGGCGCGCTGTGGCTATTACTATTACTGAAAACCCAACAGAACACTTCCTACCTGCTATCTTTTTGTTTTTTTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCAAATGACTTAGAGAGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTAGTAGTGTATGTAGAGGCTCGAACTAACTTCGCTGCCAACAAACGTTTACCACCGTCGTCGCCTACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCTCTCTTGTTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6017#1 --------------------------------------TTTTTTAATCCTTCGCTGCGGC 22
consensus_6017#2 ------------------------------------------------------------
consensus_6017#0 CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGC 60
consensus_6017#1 TGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGG- 81
consensus_6017#2 ------------------------------------------------------------
consensus_6017#0 TGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGG 120
consensus_6017#1 CGGTCTGTATTAGGACGTACAATAATATATTTA-AATGTA-TATAT-GCTCGCATTTATA 138
consensus_6017#2 ------------------------------------------------------------
consensus_6017#0 CGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATA 180
consensus_6017#1 TA---GAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGT 195
consensus_6017#2 ------------------------------------------------------------
consensus_6017#0 TATACGAGTCGCTNTCA-CATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAA 239
consensus_6017#1 GTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTT 255
consensus_6017#2 ---------AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAA 51
consensus_6017#0 ATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTT 299
* * ** * * * *
consensus_6017#1 TGCAGCCCTCTCTTATTTTGT-CATTAATGCTTATAAATGGT--GGTATGTACAGAAGAA 312
consensus_6017#2 ATCTACACTGTTTTTCTTGGG-GGAGGAGAGTGGGGGGGTGG--GGGCTGTTCTGGAGGG 108
consensus_6017#0 TGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCT 359
* * * * * * * * *
consensus_6017#1 TGGAC-ACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAAT 371
consensus_6017#2 AAGGG-TTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGG 167
consensus_6017#0 TGGGCCANACAAACGTTTAA--CGCACCGGACGGTACCGCCCTACC-TGAAATTGGCGCC 416
* * * * * ** * * * * * * ** *
consensus_6017#1 CCGATTGATAATAATTAT-TCCAACACGATTACTGCTACATTTCACC-TTACACAGGGAC 429
consensus_6017#2 GCGGCGCGCTGTGGCTAT-T-----ACTATTACTG--------------------AGAAC 201
consensus_6017#0 TCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAAT 476
* ** * * * **** *
consensus_6017#1 AGGACAGACGTAAACCTATCGCACGATGTA-CTTTCTCTCGCTCTCTCTCTTAACCTCGG 488
consensus_6017#2 CCAACAGAACTCTTCCTACC-TGCTATCT--TTTTGTTTTGTTTTAATCCTTCGCTGCGG 258
consensus_6017#0 TGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGG 536
* ** * * * * * * * * * **
consensus_6017#1 CCTCT-CTCGTTTC-TCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTA 546
consensus_6017#2 CTGC--CGCACTAA-TAAGTATACA--CACACACTCTAAGAGGGACGAGAGTTGGGGGGG 313
consensus_6017#0 ACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCT 596
* * * * * *
consensus_6017#1 GAAGAAAATTAACTACACATC---ACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAG 603
consensus_6017#2 GGGTCTGTATTGGGACGTA-C---AATAATATATT-TAAATGTATATATGCTCGCATTTA 368
consensus_6017#0 AACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAA 656
* * * * * * * * *
consensus_6017#1 CGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCT 663
consensus_6017#2 TATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGGTGACTTAGA 428
consensus_6017#0 CATATAGTTACCC-CAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACA 715
* * ** * * * * * * *
consensus_6017#1 GTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTT 723
consensus_6017#2 G-AGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTA----GTA 483
consensus_6017#0 TCACAA----AGTCACCACGC-TTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACT 770
* ** * ** * * *
consensus_6017#1 GCATTTGCAAAACTGTACATTTCGTTTGCTG---CTTGCATGCTACTACGATGCGCCTCG 780
consensus_6017#2 GTGTATGTAGAGGCTCGAACTAACTTCGCTG---CCAACAAACGTTTACCACCGTCGTCG 540
consensus_6017#0 -TGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCA 829
* * * * * ** * * *
consensus_6017#1 CG----CACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTT 836
consensus_6017#2 CC----TACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTT 596
consensus_6017#0 CAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACAC---TACCAACCAT 886
* * * * * * * *
consensus_6017#1 TGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGC-GTGTCTC-TAGCTTG 894
consensus_6017#2 TATGCGAAGTAGAAGAAGGAT--GGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCT 654
consensus_6017#0 CTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCA 946
* ** * * * * *
consensus_6017#1 C-TTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCC 953
consensus_6017#2 C-TCTTGTTTTGTCATT----AATGCTTATAAATGGTGGTATGTACAGAAGCGG------ 703
consensus_6017#0 CATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCA 1006
* * * ** * * * * * *
consensus_6017#1 TTGAATCATTTGATTACTAAACAAGTTTA 982
consensus_6017#2 -----------------------------
consensus_6017#0 C---------------------------- 1007
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||