These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1326 fasta sequence [TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGTGCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGTGTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGATGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATGACCACGCGTCACAACATCTATTCGTGTGTGATCGGCGGTGTGGTGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGTTCGTGGCGGGTGTGTTCTCCGCTGCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTACCTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTCATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAACGCATCCTTGTCCGCGTAGGATAGCGGCGCAC] [+] EMBL BX615679 [TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGTGCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGTGTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGATGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATGACCACGCGTCACAACATCTATTCGTGTGTGATCGGCGGTGTGGTGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTTACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGA ] [+] EMBL BX617352 [ CGGTACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGTTCGTGGCGGGTGTGTTCTCCGCTGCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGGTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGC ] [+] EMBL BM624472 [ ccgGTTCATCTTCGGAACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGACTGCTAATCTACGCCAAGTACTATGACTGTGATCCTCTCACTACAAAACTGGCCAAAGCCAAGGATCAGCTGCTCCCGCTGCTCGTCATGGACACACTGGGAGACTTTCCGGGGTTGCCGGGACTGTTCGTGGCGGGAGTGTTCTCCGCTGCGCTAAGCTCGCTCTCCACTGGACTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTTGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACG ] [+] EMBL BX626427 [ TCTCCACTGGTCTAAACTCCATGTCCGCGGTGGTGCTGGAAGACTTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGAAACAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTAGTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTAAGCAATGGTCCACTTTTGGGAATATTCACTCTCGGTGTGCTGATTCCATGGGCCAATGGAACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAAGCACAGTTAGCCATAGCTACTGGGGAGCTTGCGTTCGACCTAAAGCCAGTCGACACTCAGGGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACAAGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTACCTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTCATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAACGCATCCTTGTCCGCGTAGGATAGCGGCGCAC] consensusID : consensus_6018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence [TCGAGGCGCGTGTGGACGATGTGTGCAGACAATCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATTTCCGTGGTTGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACAAACNGAACGGCCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGGGATAACCCTTGGTATACTTCTTGGCCCAACCGTTTTGGGAGCCCCTTCGGGCCACACACGGAACAAGAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTGGCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGGCGCGATTTTGGCTAAAGTCTTAAACCGGCCCCAAAGGTTAACTGTAAATAGGAACGCCTTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAACAAACGCCCAAAACGCGGCAACTTCCCAACGAGCCTTAGNGCTTCCCCGCGAGAGCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAACCAAACCGAGGTTTCTACGAGCGCGACGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGCTGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCGCGACACGNAAGAGNTNTTAGGTATGGGTATCTCCGGTTACCCCACAGCGCGCTTTGAGGACGCGGTGTTTACTAAANCTGACCATTAACCCGAGGCACTTATCCNTTCCCCCAAAACGGTTNGGGGATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCGCGGACCTGCA] [+] EMBL AL697228 [TCGAGGCGCGTGTGGACGATGTGTGCAGACAATCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCTCGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGGTCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATTTCCGTGGTTGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACAAACNGAACGGCCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGGGATAACCCTTGGTATACTTCTTGGCCCAACCGTTTTGGGAGCCCCTTCGGGCCACACACGGAACAAGAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTGGCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGGCGCGATTTTGGCTAAAGTCTTAAACCGGCCCCAAAGGTTAACTGTAAATAGGAACGCCTTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAACAAACGCCCAAAACGCGGCAACTTCCCAACGAGCCTTAGNGCTTCCCCGCGAGAGCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAACCAAACCGAGGTTTCTACGAGCGCGACGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGCTGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCGCGACACGNAAGAGNTNTTAGGTATGGGTATCTCCGGTTACCCCACAGCGCGCTTTGAGGACGCGGTGTTTACTAAANCTGACCATTAACCCGAGGCACTTATCCNTTCCCCCAAAACGGTTNGGGGATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCGCGGACCTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6018#0 TTGGTTTGCTTGCCTGCTTTCTTCCCGTTAGATGGCGTGGCTACCCATAGTAATCTACGT 60 consensus_6018#1 ------------------------------------------------------------ consensus_6018#0 GCCGGCGCTCGCATTCAACCAGGTGACCGGCATCAATGTGCATCTCATCACACCCATCGT 120 consensus_6018#1 ------------------------------------------------------------ consensus_6018#0 GTGTGTCATCTGCATCTTCTACACCTGCGTCGGAGGCCTGAAGGCCGTCGTGTGGACCGA 180 consensus_6018#1 --------------------------------------TCGAGGC--GCGTGTGGAC-GA 19 * **** ********* ** consensus_6018#0 TGTGGTGCAGACAATCCTCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCT 240 consensus_6018#1 TGTG-TGCAGACAATC-TCATGTTCGGGGCAATGCTGCTGATCATCATCAAGGGAACGCT 77 **** *********** ******************************************* consensus_6018#0 CGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGG 300 consensus_6018#1 CGATGTCGGCGGCCTGTCGGTGGTGATCGAACGTGCCAAGGCGAGTGGTCGCATCGAGGG 137 ************************************************************ consensus_6018#0 TCCCGATCTACGCTTTGACAT--GACCA-CGCG--TCACAACA-TCTATTCGTGTGTGAT 354 consensus_6018#1 TCCCGATCTACGCTTTGACATTGAACCAACGCGGTTCACAACAATCTAATT-TCCGTGGT 196 ********************* **** **** ******** **** * * *** * consensus_6018#0 CGGCGGTGTGG--TGTACTGGCTGAAAACGAACGCCGTCAGTCAAAACATGATACAGCGG 412 consensus_6018#1 TGTGANTCGGGGCCGCGCTGGTTGGNTGGTTAACTTGGGGCTTGGAACA-AACNGAACGG 255 * * ** * **** ** * * * **** * * *** consensus_6018#0 TACCTGTCTCTGCCCACGTTGGCCTCGGCAAAGAAAGCGCTCTGGACGTTCATCTTCGGA 472 consensus_6018#1 CCCGGTTGCAAGTTCAAAAAAGCACACATTGCATTACCAAGCCGGG-GATAACCCTTGGT 314 * * * ** ** * * * ** * * * * * ** consensus_6018#0 ACGCTGGTCCTGCTGGCACTGTGCTGTTACAGTGGATTGCTAATCTACGCCAAGTACTAT 532 consensus_6018#1 ATACT--TCTTGGCCCAACCGTTTTG----GGAGCCCCTTCGGGCCACAC-ACGGAACAA 367 * ** ** ** ** ** ** * * * ** * * * * * consensus_6018#0 GACTGTGATCCTCTCACTACAAAACTGGCCAA------AGCCAAGGATCAGCTGCTCCCG 586 consensus_6018#1 GAGGGCGGCTTCCTTCGTAAACCGGTTTCCAATTCATTATCCGGGGAAAAACCGGCCTTG 427 ** * * ** ** * * **** * ** *** * * * * * consensus_6018#0 CTGCTCGTCATGGACACGTTGGGGGACTTTCCAGGGTTGCCGGGACTGT-TCGTGGCGGG 645 consensus_6018#1 GCGTTACCCTTTGGCAGNTTGGGCGCCAACGCTTAGATGCCTTGGCTNAACCACGTCGGG 487 * * * * * ** ***** * * * * **** * ** * * **** consensus_6018#0 TGTGTTCTCCGCT---GCGTTAAGCTCGCTCTCCACTGGTCTAAACTCCAT--GTCCGCG 700 consensus_6018#1 CGCGATTTTGGCTAAAGTCTTAAACCGGCCC--CAAAGGTTAACTGTAAATAGGAACGCC 545 * * * * *** * **** * ** * ** *** * * ** * *** consensus_6018#0 GTGGTGCTGGAAGAC--TTTTTCAAACCCTTTTCCAATCGTCCACTTTCCGAGA----AA 754 consensus_6018#1 TTNGGTTTGAATTCCCCNTCTTTACAACCTTNAACCACAAAAAACCTTNGGAGGCGCCAA 605 * * ** * * * ** * * **** * * ** ** *** ** consensus_6018#0 CAAACGTCCATAATCATGCGAGCAGTGGTGGCTATCTTTGGTGCAATCTGCGTTGGGTTA 814 consensus_6018#1 CAAACGCCCAAAACGCGGCAACT--TCCCAACGAGCCTTAGNG----CTTCCCCGCGAGA 659 ****** *** ** ** * * * * * ** * * ** * * * * consensus_6018#0 GTGTTGGTAGTTGAGAAGCTTGGCTCTGTGCTTCAGCTGTCCATGAGCCTTGGCAGCGTA 874 consensus_6018#1 GCATTGCNCTTCCCGGTTCCCGAGTTTGGGGAAC--CAAACCGAGGTTTCTACGAGCGCG 717 * *** * * * * * ** * * * ** * * **** consensus_6018#0 AGCAATGGTCCACTTTTGGGAATATTTACCCTCGGTGTGCTGATTCCATGGGCCAATGGA 934 consensus_6018#1 A-CGACGAAACCGTTTTATCGCCACAAACGCGGGGGATTTATATNAGCCCAGNCAGCGC- 775 * * * * * **** * ** * ** * ** * ** * consensus_6018#0 ACGGGAGCCATTGTTGGTGGTACCATTGGTCTCTTGGTGATGATTTGGGTTTGCCTTAAA 994 consensus_6018#1 -TGATACACACTTTNGGGGCTATTCCCGAGGATNAGGCG-CGACACGNAAGAGNTNTTAG 833 * * ** * * ** * ** * ** * ** * * * * consensus_6018#0 GCACAGTTAGCCATAGCTACTGGGGAGCTTGCATTCGACCTAAAGCCAGTCGACACTCAG 1054 consensus_6018#1 GTATGGGTATCTCCGGTTACCCCACAGCGCGC-TTTGA---GGACGCGGTGTTTACTAAA 889 * * * ** * * *** *** ** ** ** * * ** *** * consensus_6018#0 GGTTGCAGCTATCACTTTATTGCCAGTGAACCGATGAGCATGCTTGCGATAAACACCACA 1114 consensus_6018#1 NCTGACCATTAAC---------CCGAGGCACTTATC--CNTTCCCCCAAAACGGTTNGGG 938 * * ** * ** * ** ** * * * * * * consensus_6018#0 AGCCTCTCGATAGACGCAACGCCAGTCGAACCCGAGTTTGCACTCTACCACATATCCTAC 1174 consensus_6018#1 GATTTCCCGTTTAACAAGAAGACGNTCACCACCAACAGTTCGGTTCACCCCG---CGGAC 995 ** ** * ** * * * ** ** * * * * *** * * ** consensus_6018#0 CTGTGGTACACGACGATGGGAGCTCTAATCACCATCATCATCGCCGTCATTGTATCGTTC 1234 consensus_6018#1 CTGCA------------------------------------------------------- 1000 *** consensus_6018#0 ATCGTTGGGCCAAACAAACCGGACGAGATGAATCCCAACCTCTTCTCGCCATTCATCCAA 1294 consensus_6018#1 ------------------------------------------------------------ consensus_6018#0 CGCATCCTTGTCCGCGTAGGATAGCGGCGCAC 1326 consensus_6018#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||