These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 931 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG-TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCATTCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA] [+] EMBL BM645649 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACT ] [+] EMBL BM607332 [ ccGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCATTCAGCCGCG ] [-] EMBL CNS08Z1I [ GTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTTCAG TGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGAAGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTT TGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCA TCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA] consensusID : consensus_6019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 873 fasta sequence [ATTTTGGGTTCATTTATTCCATTCTTGTCGCACTGTGAAGAGTAGTTGGTAGAAACTTAAAACAGAAGCCAAAAAAACGCACATACACACATTTAGATCTTGTTGAATGCGGCAATGTCCACAGACTGTACGTAATCCTCGAACTCCTGAATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGATAACGCAGCAGATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCTCCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCTCCATTTCCTTCATGTCGGTTTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATGGAGCTCTTGGCGATGAGGGCAGGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAGGCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTCTCTTCCTCATCCTCCGATCCGAACAGATCCACATCATCATCATCGTCTCCGCCGGCCGGTGCGGCGGCGACAGTTGGCTTGCCGCCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGTTGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCTTTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAGCTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCGAATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTGTGCCCGATGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT] [+] EMBL CNS097OY [ATTTTGGGTTCATTTATTCCATTCTTGTCGCACTGTGAAGAGTAGTTGGTAGAAACTTAAAACAGAAGCCAAAAAAACGCACATACACACATTTAGATCTTGTTGAATGCGGCAATGTCCACAGACTGTACGTAATCCTCGAACTCCTGAATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGATAACGCAGCAGATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCTCCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCTCCATTTCCTTCATGTCGGTTTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATGGAGCTCTTGGCGATGAGGGCAGGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAGGCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTCTCTTCCTCATCCTCCGATCCGAACAGATCCACATCATCATCATCGTCTCCGCCGGCCGGTGCGGCGGCGACAGTTGGCTTGCCGCCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGTTGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCTTTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAGCTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCGAATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTGTGCCCGATGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT] consensusID : consensus_6019#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGCCCACGCGTCCGGTTGAGGTTAAGAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAGAACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAAATGGCCGAAGTACATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATCCCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGCCGACGGCCCAGCAGGTGATGAAGATGCTGGAGAAGTACCGCCCGGAGAACCCGATCGCTCGCGTCCAGCGCCTGAAGGCGAAGGCGGAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGAAGCGGGCCAACCAGCTGCGCCAGGGCATCAACTCCGTGGTGAAGATGGTCGAGCAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTCTACCTGCCGGCGCTCTGCCGCAAGATGGGCGTGCCGTACTGCATCATCAAGGGTAAGGCGCGCCTCGGCACGCTGGTGTACCGCAAGACGTGCACCTGCGTTGCGCTGAGCCAGGTCGAGAACGCGGACAAGCCCAACCTGGCCAAGCTGGT] [+] EMBL BM604249 [CCGCCCACGCGTCCGGTTGAGGTTAAGAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAGAACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAAATGGCCGAAGTACATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATCCCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGCCGACGGCCCAGCAGGTGATGAAGATGCTGGAGAAGTACCGCCCGGAGAACCCGATCGCTCGCGTCCAGCGCCTGAAGGCGAAGGCGGAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGAAGCGGGCCAACCAGCTGCGCCAGGGCATCAACTCCGTGGTGAAGATGGTCGAGCAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTCTACCTGCCGGCGCTCTGCCGCAAGATGGGCGTGCCGTACTGCATCATCAAGGGTAAGGCGCGCCTCGGCACGCTGGTGTACCGCAAGACGTGCACCTGCGTTGCGCTGAGCCAGGTCGAGAACGCGGACAAGCCCAACCTGGCCAAGCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6019#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAG 60 consensus_6019#1 --------------------------------ATTTTGGGTTCATTTATTC-CATTCTTG 27 consensus_6019#2 ------------------------------------------------------------ consensus_6019#0 ATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAG 120 consensus_6019#1 TCGCACTGTGAAGAGTAGTTGGTAGAA-ACTTAAAACAGAAGCCAAAAAAACGCACATAC 86 consensus_6019#2 --------------------------------------------------CCGCCCACGC 10 * * * consensus_6019#0 AAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCC 180 consensus_6019#1 ACACATTTAGATCTTG-----TTGAATGCGGCAATGTCCAC---AGACTGTA-CGTAATC 137 consensus_6019#2 GTCCGGTTGAGGTTAA-------GAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAG 63 ** * * ** ** consensus_6019#0 AAGTCGCGCTTCTGGTACTTCCTGCGTCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAG 240 consensus_6019#1 C--TCGAACTCCTGA-ATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGAT 194 consensus_6019#2 AACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAA-ATG 122 * * * * * * * * * * * * * * consensus_6019#0 ATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATC 300 consensus_6019#1 AACGCAGCA--GATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCT 252 consensus_6019#2 GCCGAAGTA--CATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATC 180 ** * *** * * * * * consensus_6019#0 TGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTG 360 consensus_6019#1 ---CCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCT----CCATTTCCTT 305 consensus_6019#2 CCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGC----------CGACGGCCCA 230 * * * * * ** * * * ** consensus_6019#0 ACCGTTGGCGGTGCCGTCACG-CAGTGCTACAGTGACATGGCCTCCCGTC-ACCGTGCCC 418 consensus_6019#1 CATGTCGGT--TTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATG 363 consensus_6019#2 GCAGGTGATGAAGATGCTGGAGAAGTACCGCC----CGGAGAACCCGATCGCTCGCGTCC 286 * * ** * * ** * consensus_6019#0 GTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGC-GCCGT 477 consensus_6019#1 GAGCTCTTGGCGATGAGGGCA----GGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAG 419 consensus_6019#2 -AGCGCCTGAAGGCGAAGGCG--GAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGA 343 ** * * * * ** * ** * consensus_6019#0 GCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCAC 537 consensus_6019#1 GCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTC---TCTTCCTCATCCTCCGATCCGAA 476 consensus_6019#2 A-GCGGGCCAACCAGCTGCGCCA---GGGCATCA---ACTCCGTGGTGAAGATGGTCGAG 396 ** * *** * * * * * * * consensus_6019#0 CACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCG-CCCGGAGACCTTCTACCAGTAAGG 596 consensus_6019#1 CAGATCCAC-ATCATCA-TCATCGTCT--CCGCCG-GCCGGTGCGGCGGCGACAGTTGGC 531 consensus_6019#2 CAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTC 456 ** * * * * * ** ** consensus_6019#0 CGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCA-TACGTATCGCCGC 655 consensus_6019#1 TTGCCG--CCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGT 589 consensus_6019#2 TACCTG--CCGGCGCTCTGCCGCAAGA--TGGGCGTGCCGTACTGC---ATCATCAAGGG 509 * * ** *** ** * * * * consensus_6019#0 C--ACAGCGCCACGGATTCGTCCGCATTCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTG 713 consensus_6019#1 TGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCT 649 consensus_6019#2 T--AAGGCGCGCCTCGG-CACGCTGGTGTA-CCGCAAGACGTGCACCTGCGTTGCG--CT 563 * ** * * * * * * * * consensus_6019#0 CTGCT-GCTGCGT-GTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTT-TACGGTGCGG 770 consensus_6019#1 TTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAG 709 consensus_6019#2 GAGCC-AGGTCGA-GAACGCGGACAAGCCCAACC-TGGCCAAGCTGGT------------ 608 ** * * * ** * * ** * consensus_6019#0 -TGTGATGATGATGCTGTGTGT---ATTCCTCTGGTTGAAGTGTTAATTTG-CACCGG-A 824 consensus_6019#1 CTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCG 769 consensus_6019#2 ------------------------------------------------------------ consensus_6019#0 AATACAGTTGCGGCCCCCCTTCTCTTTCCATC-CACCCCAGGGGGGGAAGTCTTTGAGCA 883 consensus_6019#1 AATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTG 829 consensus_6019#2 ------------------------------------------------------------ consensus_6019#0 AAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA 931 consensus_6019#1 TGCCCGA---TGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT- 873 consensus_6019#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||