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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1062 fasta sequence
[CCGCCCGGACATATTTAACCAGCACGTAAACGAAGCTTGCTTCACATACGACAAACGTATCAATGCGCAAAGCAAAGTGACCGAGCTTGTAGCGGAAGAGTGAACCACCCCTCACACCACACCTTTTTCCCGTCCTTTTTTCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAATGCCTGCTTAGTGATTTTAGTGCGAAGAATAATGCCATCGTTTAAAAACAAAGCCTCGAAATAATGTACCTTTTCTACTGCCAGCAAAACGTAACTGGACACAGCTGGACACACACACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAGAAAAAAAGGAAAACATGGGCATACTGTGGTAATATGAGTGTGCGTGCCCACCATGTGAACGGATAATGCTCTCCTACTATATACTCCACACGATCGCGTGCAACGCAAAAAAAGCAGTATTTTCGATAGACATGAGTGTGCGTTACGGCGAGCACAGGTAGTTAGCAAAACAGTGATGCCAACAAACGTATATTACTAGAGCCTCCAAACACATACTAACTATATGTTCC-TTTTATTGCGAGAAAAAAGTGCGTAACGAACCACCCAGGGCATAGAGACTATTGGTAAGCCATTTTATGCTTCCCATTTATATTGCCCGGATTATATTCCCTCCCAGTGGATTTTTTTAGGGCGAACCACGCGACACGGGTCAGTGCAACGAGCATACAACAGAACCATCACCACCTTCTTCCTTCCCGCCCCTTTTTCTCTTCCCTAAGATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACACATACACACTGTTTAGTGTTTTAGTACAATCTTTTGAAGCGATAGAAAGCGATAGAGCGAGAGAGAATGCATTTTATATTATCTTCTGCACAGCAGCAGTTTTGTTACCAGTTGGCGGCGGCGTATAAGCATTTTTGTTCGTATTTTACACATTAGATTTTACCTAACAACGGGTGAGCAATGACTAGCGTCTTATGAACGAAAACAA]
[+] EMBL BM657626 [CCGCCCGGACATATTTAACCAGCACGTAAACGAAGCTTGCTTCACATACGACAAACGTATCAATGCGCAAAGCAAAGTGACCGAGCTTGTAGCGGAAGAGTGAACCACCCCTCACACCACACCTTTTTCCCGTCCTTTTTTCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAATGCCTGCTTAGTGATTTTAGTGCGAAGAATAATGCCATCGTTTAAAAACAAAGCCTCGAAATAATGTACCTTTTCTACTGCCAGCAAAACGTAACTGGACACAGCTGGACACACACACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAGAAAAAAAGGAAAACATGGGCATACTGTGGTAATATGAGTGTGCGTGCCCACCATGTGAACGGATAATGCTCTCCTACTATATACTCCACACGATCGCGTGCAACGCAAAAAAAGCAGTATTTTCGATAGACATGAGTGTGCGTTACGGCGAGCACAGGTAGTTAGCAAAACAGTGATGCCAACAAACGTATATTACTAGAGCCTCCAAACACATACTAACTATATGTTCC TTTTATTGCGAGAAAAAAGTGCGTAACGAACCACCCAGGGCATAGAGACTATTGGTAAGCCATTTTATGCTTCCCATTTATATTGCCCGGATTATAT ]
[+] EMBL BX623456 [ ATACGACAAACGTATCAATGCGCAAAGCAAAGTGACCGAGCTTGTAGCGGAAGAGTGAACCACCCCTCACACCACACCTTTTTCCCGTCCTTTTTTCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAATGCCTGCTTAGTGATTTTAGTGCGAAGAATAATGCCATCGTTTAAAAACAAAGCCTCGAAATAATGTACCTTTTCTACTGCCAGCAAAACGTAACTGGACACAGCTGGACACACACACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAGAAAAAAAGGAAAACATGGGCATACTGTGGTAATATGAGTGTGCGTGCCCACCATGTGAACGGATAATGCTCTCCTACTATATACTCCACACGATCGCGTGCAACGCAAAAAAAGCAGTATTTTCGATAGACATGAGTGTGCGTTACGGCGAGCACAGGTAGTTAGCAAAACAGTGATGCCAACAAACGTATATTACT ]
[+] EMBL BX615456 [ CACACACAACGTCTCTGCACACAAAGTTACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAG AGAAAAGGAAAACATGGGCATACTGTGGTAATATGAGTGTGCGTGCCCACCATGTGAACGGATAATGCTCTCCTACTATATACTCCACACGATCGCGTGCAACGC AAAAAAGCAGTATTTTCGATAGACACGAGTGTGCGTTACGGCGAGCACAGGTAGCTAGCAAAACAGTGATGCCAACAAACGTATATTACTAGAGCCTCCAAACACATACTAACTATATGTTCCTTTTTTTTGCGAGAAGAAAGTGCGTAACGAACCACCCAGGGCATAGAGACTATTGTTAAGCCATTTTAAGCTTCCAATTTATATTGTCCGGATTATATTCCCTCCCAGTGGATTTTTTTAGGGCGAACCACGCGACACGGGTCAGTGCAACGAGCATACAACAGAACCATCACCACCTTCTTCCTTCCCGCCCCTTTTTCTCTTCCCTAAGATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACACATACACACTGTTTAGTGTTTTAGTACAATCTTTTGAAGCGATAGAAAGCGATAGAGCGAGAGAGAATGCATTTTATATTATCTTCTGCACAGCAGCAGTTTTGTTACCAGTTGGCGGCGGCGTATAAGCATTTTTGTTCGTATTTTACACATTAGATTTTACCTAACAACGGGTGAGCAATGACTAGCGTCTTATGAACGAAAACAA]
consensusID : consensus_6020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 974 fasta sequence
[AAGAATNGCCCGAGGTTTAACGAAGCTTGCTTCACATACGACAAACGTATCAATGCGCAAAGCAAAGTGACCGAGCTTGTTGCGGAAGAGTGAACCACTCCCCCTCACACCACACCTTTTTCGCGTCCTTTTTTTCCCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAATGCCTGCTTAGTGATTTTAGTGCGACGAATAATGCCATCGTTTAANAAAGAAAAATGCCTCGAAATAATGTACCTTTTCTACTGGCAGCAAAACGTAACTGGACACAGCTGGACACACACACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAGAACANNAGGAAAACATGGGCATACATGGCACGGTATAGTGTGTTANGTAGTGCGTGCGTCCCCAACATGTGAACGGATAATGCTCTCCTATTATATACTCCACACGATCGCGTGCAACGCAAAAAACGCAGTCATTTATCGATAGACACGAGTGTGCGTTACGGCGAGCACAGGTAGCTAGCAAAACAGTGATGCCAACAAACCGTATTATTACTAGAGCCTCCAAACACATACTAACTACTA-GTTCCTTTTTTTGCGAGAAGAAAGTGCATAACGAACCACCCAGGGCATAGAGACTATTGTTAAGCCATTTTAAGCTTCCAATTTATATTGTCCGGATTATATTCCCTTCCAGTGGTTTTTTTGGGGCGAACCACGCGACACGGGTCAGTGCAACGAGCATACAACAGAACCATCACCACCTCCTTCCTTCCGCCCCCGTTTTTCTCTTCCCTAAGATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACACACACACTGTTTAGTGTTTTAGTACAATCTTTTGAAGCGATAGAGAGAGCGATAGAGAGAGAGAGAGAATGCATTTTATATTATCTTCTGCACAGCAGCAGT]
[+] EMBL AL693682 [AAGAATNGCCCGAGGTTTAACGAAGCTTGCTTCACATACGACAAACGTATCAATGCGCAAAGCAAAGTGACCGAGCTTGTTGCGGAAGAGTGAACCACTCCCCCTCACACCACACCTTTTTCGCGTCCTTTTTTTCCCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAATGCCTGCTTAGTGATTTTAGTGCGACGAATAATGCCATCGTTTAANAAAGAAAAATGCCTCGAAATAATGTACCTTTTCTACTGGCAGCAAAACGTAACTGGACACAGCTGGACACACACACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCACAAAAGCAAGCAATCCTGAAGAACANNAGGAAAACATGGGCATACATGGCACGGTATAGTGTGTTANGTAGTGCGTGCGTCCCCAACATGTGAACGGATAATGCTCTCCTATTATATACTCCACACGATCGCGTGCAACGCAAAAAACGCAGTCATTTATCGATAGACACGAGTGTGCGTTACGGCGAGCACAGGTAGCTAGCAAAACAGTGATGCCAACAAACCGTATTATTACTAGAGCCTCCAAACACATACTAACTACTA ]
[+] EMBL BX623882 [ AATCCTGAAGAA AAAAGGAAAACATGGGCATACATGGCACGGT TTGTGTGTT TGT GTGCGTGCGTCCCCACCATGTGAACGGATAATGCTCTCCTATTATATACTCCACACGATCGCGTGCAACGCAAAAAA GCAGT ATTT TCGATAGACACGAGTGTGCGTTACGGCGAGCACAGGTAGCTAGCAAAACAGTGATGCCAACAAA CGTA TATTACTAGAGCCTCCAAACACATACTAACTA TATGTTCCTTTTTTTGCGAGAAGAAAGTGCATAACGAACCACCCAGGGCATAGAGACTATTGTTAAGCCATTTTAAGCTTCCAATTTATATTGTCCGGATTATATTCCCTTCCAGTGGTTTTTTTGGGGCGAACCACGCGACACGGGTCAGTGCAACGAGCATACAACAGAACCATCACCACCTCCTTCCTTCCGCCCCCGTTTTTCTCTTCCCTAAGATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACACACACACTGTTTAGTGTTTTAGTACAATCTTTTGAAGCGATAGAGAGAGCGATAGAGAGAGAGAGAGAATGCATTTTATATTATCTTCTGCACAGCAGCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6020#0 CCGCCCGGACATATTTAACCAGCACGTAAACGAAGCTTGCTTCACATACGACAAACGTAT 60
consensus_6020#1 ----------AAGAATNGCCCGAGGTTTAACGAAGCTTGCTTCACATACGACAAACGTAT 50
* * ** * * ********************************
consensus_6020#0 CAATGCGCAAAGCAAAGTGACCGAGCTTGTAGCGGAAGAGTGAACCAC---CCCTCACAC 117
consensus_6020#1 CAATGCGCAAAGCAAAGTGACCGAGCTTGTTGCGGAAGAGTGAACCACTCCCCCTCACAC 110
****************************** ***************** *********
consensus_6020#0 CACACCTTTTTCCCGTCCTTTTTT---CCCCCTCGGGGTGTGCCACTCCTCCCGACGAAA 174
consensus_6020#1 CACACCTTTTTCGCGTCCTTTTTTTCCCCCCCTCGGGGTGTGCCACTCCTCCCGACGAAA 170
************ *********** *********************************
consensus_6020#0 TGCCTGCTTAGTGATTTTAGTGCGAAGAATAATGCCATCGTTTAAAAACAAA----GCCT 230
consensus_6020#1 TGCCTGCTTAGTGATTTTAGTGCGACGAATAATGCCATCGTTTAANAAAGAAAAATGCCT 230
************************* ******************* ** ** ****
consensus_6020#0 CGAAATAATGTACCTTTTCTACTGCCAGCAAAACGTAACTGGACACAGCTGGACACACAC 290
consensus_6020#1 CGAAATAATGTACCTTTTCTACTGGCAGCAAAACGTAACTGGACACAGCTGGACACACAC 290
************************ ***********************************
consensus_6020#0 ACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCA 350
consensus_6020#1 ACACACAACGTCTCTGCACACAAAGTAACAAACACTAACCTTAGGGTGGACAAAGACGCA 350
************************************************************
consensus_6020#0 CAAAAGCAAGCAATCCTGAAGAAAAAAAGGAAAACATGGGCATAC--------------T 396
consensus_6020#1 CAAAAGCAAGCAATCCTGAAGAACANNAGGAAAACATGGGCATACATGGCACGGTATAGT 410
*********************** * ****************** *
consensus_6020#0 GTGGTAATATGAGTGTGCGTGCCCACCATGTGAACGGATAATGCTCTCCTACTATATACT 456
consensus_6020#1 GTGTTANGTAGTGCGTGCGTCCCCAACATGTGAACGGATAATGCTCTCCTATTATATACT 470
*** ** * * ****** **** ************************* ********
consensus_6020#0 CCACACGATCGCGTGCAACGCAAAAAAAGCAGT-ATTT-TCGATAGACATGAGTGTGCGT 514
consensus_6020#1 CCACACGATCGCGTGCAACGCAAAAAACGCAGTCATTTATCGATAGACACGAGTGTGCGT 530
*************************** ***** **** ********** **********
consensus_6020#0 TACGGCGAGCACAGGTAGTTAGCAAAACAGTGATGCCAACAAAC-GTAT-ATTACTAGAG 572
consensus_6020#1 TACGGCGAGCACAGGTAGCTAGCAAAACAGTGATGCCAACAAACCGTATTATTACTAGAG 590
****************** ************************* **** **********
consensus_6020#0 CCTCCAAACACATACTAACTATATGTTCCTTTTATTGCGAGAAAAAAGTGCGTAACGAAC 632
consensus_6020#1 CCTCCAAACACATACTAACTACTAGTTCCTTTTTTTGCGAGAAGAAAGTGCATAACGAAC 650
********************* ********* ********* ******* ********
consensus_6020#0 CACCCAGGGCATAGAGACTATTGGTAAGCCATTTTATGCTTCCCATTTATATTGCCCGGA 692
consensus_6020#1 CACCCAGGGCATAGAGACTATTGTTAAGCCATTTTAAGCTTCCAATTTATATTGTCCGGA 710
*********************** ************ ****** ********** *****
consensus_6020#0 TTATATTCCCTCCCAGTGGATTTTTTTAGGGCGAACCACGCGACACGGGTCAGTGCAACG 752
consensus_6020#1 TTATATTCCCTTCCAGTGG-TTTTTTTGGGGCGAACCACGCGACACGGGTCAGTGCAACG 769
*********** ******* ******* ********************************
consensus_6020#0 AGCATACAACAGAACCATCACCACCTTCTTCCTTCCCGCCCC-TTTTTCTCTTCCCTAAG 811
consensus_6020#1 AGCATACAACAGAACCATCACCACCTCCTTCCTTCCGCCCCCGTTTTTCTCTTCCCTAAG 829
************************** ********* **** *****************
consensus_6020#0 ATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACACATACACACTGTTTAGT 871
consensus_6020#1 ATCGTGTATTCATCCCAGATGAAGTGATAATGTTAGTGGAACAC--ACACACTGTTTAGT 887
******************************************** **************
consensus_6020#0 GTTTTAGTACAATCTTTTGAAGCGATAGAAAG--CGATAGAGCGAGAGAGA--ATGCATT 927
consensus_6020#1 GTTTTAGTACAATCTTTTGAAGCGATAGAGAGAGCGATAGAGAGAGAGAGAGAATGCATT 947
***************************** ** ******** ******** *******
consensus_6020#0 TTATATTATCTTCTGCACAGCAGCAGTTTTGTTACCAGTTGGCGGCGGCGTATAAGCATT 987
consensus_6020#1 TTATATTATCTTCTGCACAGCAGCAGT--------------------------------- 974
***************************
consensus_6020#0 TTTGTTCGTATTTTACACATTAGATTTTACCTAACAACGGGTGAGCAATGACTAGCGTCT 1047
consensus_6020#1 ------------------------------------------------------------
consensus_6020#0 TATGAACGAAAACAA 1062
consensus_6020#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||