These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 833 fasta sequence [CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC-AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT-AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC---TT-GCAAACTACAAT-TAGACCACCACATTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG] [+] EMBL BM591309 [CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAATAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCAAGAATGATTGTAGTGCAAGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTGTGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC AACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTGTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCT AAAACTGAGGGGGAAAACATCTGACTTCCTTCCTCATCTAACATGTGTACGTC TT GCAAACTACAAT TAGACCACCACAT ] [+] EMBL BX620232 [ CTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAGAATCAAACCTTAAGCAAGCCAACAAAGCATTAGGTGGAGAAGTAAATGTGTTTGAAATGAAAGGATAATGAAGAAAATCACAATTATCGCTAATGGAGCATCTACAAGGTGAATGCGACTCCGTTGGAAGAAACTGCGAATGCGTAACACGTAGCCAATAAATATAATTTATTGAATGTCCCAATTTTTTGGGCAAAAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAA TAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCG] consensusID : consensus_6021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT-AAAAATGGGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA] [+] EMBL BX466478 [AGCTCGTAGGCAGAATCCGCCGANGCTTAGGTGT AAAAATGGGGAC CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAGCCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAGAGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAGAAACTGCGAATGCGTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNCCAATTTTTATAGGGCAAAGAACCAC ] [+] EMBL BX614953 [ tgaaatctCTTAGGTGTAAAAAATGGGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTATGCTGAAGCGAAGAATCTAGAGCGACAATTCTTCTGTAAACAATGGAAAGACTAGAAAAAAGGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATG AAGAATCAAACCTTAAGCAAGCCAAC AAAGCATTAGGTGGAGAAGTA AATGTGTTTGAAATGAAAGGATAATGAAGAA A ATC ACAATTATCGCTA ATGGAGCATCTACAAGGTGAATGCGAC TCCGTTGGA AGAAACTGCGAATGCGTAACAC GTAGCCAATAA A TATA A T TTATTGAATGT CCCAATTTTT T GGGCAAA AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCAAACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATCTGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA] consensusID : consensus_6021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC] [-] EMBL AGA282401 [ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAACAAACTAGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATAATGGCGTGAAGACAGCGATACAGTTCGGTGCTATTGAGGAGTAATGAAAAAAGAATGTAAATTCTACAAAATATCAAAATAACAGGCAACCGTTGCGCGATTGTAAGAATGCTGATGAATTGCAGGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6021#0 CCGTAGCAAAGTAATACATTATTAGATAAATCAAATTAATCTTAATAGTGAGGAAGGAAA 60 consensus_6021#1 ------------------------------------------------------------ consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 TAAGTTGGGAAAGAAGTAGTCGGGCAAGACAAGGCAGAATCGTTAGGTTGATCGTATGCA 120 consensus_6021#1 ------------------------------------------------------------ consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 AGAATGATTGTAGTGCA-AGGTTGCACACGCTGAAATCTCTTAGGTGTAAAAAATGGGTG 179 consensus_6021#1 -----------AGCTCGTAGGCAGAATCCGCCGANG---CTTAGGTGTAAAAA-----TG 41 consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 TGGACACAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 239 consensus_6021#1 GGGAC-CAGCTTGAATGAACGGTGTATTGTGTGATTGTGACAAGAACGGTTATGTTTTAT 100 consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 GCTGAAGTGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 299 consensus_6021#1 GCTGAAGCGAAGAATCTAGAGCGACAATTCTTCCGTAAACAATGGAAAGACTAGAAAAAA 160 consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 GGCAAACCTTTTGGTAATTATCAAAGAGCTAAAAAATGAAGAAGC--AACCTTAAGCAAG 357 consensus_6021#1 GGCAAACCTTTTGGTAATTATCAAAGAGCTGAAAAATGAAAGAATCAAACCTTAAGCAAG 220 consensus_6021#2 -----ACGTCTTGCAAACTACAATTAGACCACACACATTAGCAATAAAATGTAGAGCAA- 54 ** * *** ** ** * * * * * * ** * ***** consensus_6021#0 CCAAC-AAAGCATTAGGTGGAGAAGTA-AATGTGTGTGAAATGAAAGGATAATGAAGAAA 415 consensus_6021#1 CCAACGAAAGCATTAGGTTGAGAAGTACAATGTGTTTGAAATGANAGGATAATGAAGAAG 280 consensus_6021#2 CAAAC--TAGTATTTAGCTAGCTACAAGGACTTGCATTGTG-GTAAGGGCGATGAATAGG 111 * *** ** *** * * * * ** * * *** ***** * consensus_6021#0 A---TCACAATTATCGCTA-ATGGAGCATCTACAAGGTGAATGCGAC-TCCGTTGGA-AG 469 consensus_6021#1 AGATCGACAATTATCGCTAGATGGAGCATCTACAAGGTGAATGCGACATCCGTTGGAGAG 340 consensus_6021#2 ACGACG-CAAGTGACGATACTAGCGCAAGATACAGCAGTGATGAACCACTAACTAGGATA 170 * *** * ** ** * * **** *** * * * consensus_6021#0 AAACTGCGAATGC-GTAACAC-GTAGCCAATAAA---TATAA---TTTATTGAATGTCCC 521 consensus_6021#1 AAACTGCGAATGC-GTAACACAGTAGCCGATAANACGTATAGACTCTTATTGAATGTNNC 399 consensus_6021#2 ATGGCGTGAAGACAGCGATACAGT--TCGGTGCTAT-TGAGGAGTAATGAAAAAAGAATG 227 * * *** * * * ** ** * * * * ** * consensus_6021#0 AATTTTTT---GGGCAAA-AACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 577 consensus_6021#1 CAATTTTTATAGGGCAAAGAACCACGAAATGCGAGAGACACGTCATGTAGTTAGTAGCCA 459 consensus_6021#2 TAAATTCT-----ACAAAATATCA--AAATAACAGGCAACCGTTGCGCGATTG-----TA 275 * ** * **** * ** **** ** * *** * ** * consensus_6021#0 AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAA-CTGAGGGGGAAAACATC 636 consensus_6021#1 AACATACTCACGAATGGAAGAAAATGACGTAGTGAGCTAAAAACTGAGGGGGTAAACATC 519 consensus_6021#2 AGAATGCTGATGAATTGCAGGCAC------------------------------------ 299 * ** ** * **** * ** * consensus_6021#0 TGACTTCCTTCCTCATCTAACATGTGTACGTCTTGCAAACTACAATTAGACCACCACATT 696 consensus_6021#1 TGACTTCCTCCCTCATCTAACATGTGTACGTCACATTAGCAATA---------------- 563 consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 AGTATTTAGCTAGCTACAAGGACTTGCATTGTGGTAAGGGCGATGAATAGGACGACGCAA 756 consensus_6021#1 ------------------------------------------------------------ consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 GTGACGATACTAGCGCAAGATACAACAGTGATGAACCACTAACTAGGATAATGGCGTGAA 816 consensus_6021#1 ------------------------------------------------------------ consensus_6021#2 ------------------------------------------------------------ consensus_6021#0 GACAGCGATACAGTTCG 833 consensus_6021#1 ----------------- consensus_6021#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||