These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 751 fasta sequence [CCCCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACCCCGCAAGAGAATCCTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGGGATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA] [+] EMBL BM615781 [ CCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCC ACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCAAAACTACCCCGCAAGAGAATCCTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAATTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATG ] [+] EMBL BM580506 [ccgaGCAGTCGCACTAGACTACTCCGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAGGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAACATAGTTGATCACAAAAGATACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAATGTTCTAGTTTTACGTGTGCAGATCAACGCAAAGGCCTTTTTTAAGCAATCAGTTTCTAAACTACCCCGCACGAGAATCGTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTC ] [+] EMBL BM575778 [ ccgCGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAGAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCATTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCC ] [+] EMBL BM613950 [ ccgCAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAGGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAACATAGTTGATCACAAAAGATACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAATGTTCTAGTTTTACGTGTGCAGTTCAACGCAAAGGCCTTTTTTAAGCAATCAGTTTCTAAACTACCCCGCACGAGAATCGTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGGGATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA] consensusID : consensus_6026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGCAAACG] [+] EMBL BX468927 [GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGCAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6026#0 CCCCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCT 60 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 CCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCG 120 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 GCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGA 180 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 TAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCA 240 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 TATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCA 300 consensus_6026#1 -------------GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCA 47 * ** *************************** consensus_6026#0 AAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACCCCGCAAGAGAATCCTAAACGTTCGA 360 consensus_6026#1 AAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGA 107 ********************************** ********************** ** consensus_6026#0 GAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAG-TGCTGACATTCCT 419 consensus_6026#1 GAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCT 167 ********************************************** ************* consensus_6026#0 GGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTT 479 consensus_6026#1 GGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTT 227 ************************************************************ consensus_6026#0 CAAGTTTGGC-ACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGG 538 consensus_6026#1 CAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGG 287 ********* ************************************************* consensus_6026#0 ACGTTG-AAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGC 597 consensus_6026#1 ACGTTGCAAACG------------------------------------------------ 299 ****** ***** consensus_6026#0 TACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTAC 657 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 ATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGG 717 consensus_6026#1 ------------------------------------------------------------ consensus_6026#0 GATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA 751 consensus_6026#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||