These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 812 fasta sequence [ACCCACGCGTCCGGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA-GGGACATTTTCGCACCGAAGCG-AAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGATGGTTTTATGTGCTGGTTTGGTGTTAATTTTAGCTGTAAATACATTT] [+] EMBL BM582353 [ACCCACGCGTCCGGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTTTCGCACCGAAGCGAAAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCC ] [+] EMBL BX621661 [ ACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA GGGACATTTTCGCACCGAAGCG AAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGA ] [-] EMBL BX628966 [ AGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTNTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTNTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA GGGACATTTTCGCACCGAAGCG AAAGGAGAGTNTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGTTCTAGCGCGTGTGTAGTGGTTTCGATGTCGATGGTTTTATGTGCTGGTTTGGTGTTAATTTTAGCTGTAAATACATTT] consensusID : consensus_6029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGGAATGCAACATCGACGACATCGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAACGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAAAGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCGTGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCGGCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCATCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTAAGCCGGAAGGGGTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGACTAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAGGAATTCNTTCCGAGAGGTACCTTANCAGCAAAGTTCCGGGGGCAAGAGGGGAACAGTTCCCCGGACGCGTTNTCC] [+] EMBL BX467995 [GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGGAATGCAACATCGACGACATCGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAACGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAAAGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCGTGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCGGCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCATCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTAAGCCGGAAGGGGTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGACTAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAGGAATTCNTTCCGAGAGGTACCTTANCAGCAAAGTTCCGGGGGCAAGAGGGGAACAGTTCCCCGGACGCGTTNTCC] consensusID : consensus_6029#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTCCCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC] [+] EMBL BX467276 [GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTCCCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6029#0 ------------------------------------------------------------ consensus_6029#2 ------------------------------------------------------------ consensus_6029#1 GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGG 60 consensus_6029#0 --------ACCCACGCGTCCGGACCAGACGACGGCGAGCGACG-GTAGACAGGCCGGGGG 51 consensus_6029#2 ---GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGG 57 consensus_6029#1 AATGCAACATCGACG-ACATCGACCAGACGACGGCGAGCGACG-GTAGACAGGCCGGGGG 118 * * * ******************* **************** consensus_6029#0 GTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 111 consensus_6029#2 GTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 117 consensus_6029#1 GTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 178 ****************** ***************************************** consensus_6029#0 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGG-ACGTTCGTCACCGTG-CTCAAG--A 167 consensus_6029#2 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGG-ACGTTCGTCACCGTG-CTCAAG--A 173 consensus_6029#1 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAA 238 ********************************** *************** ***** * consensus_6029#0 CGACGCTGCG-CACTCGCGGCCTCTCCC-TGCAGG-ACGTACCG-CCCCTGGCGACGGAA 223 consensus_6029#2 CGACGCTGCG-CACTCGCGGCCTCTCCC-TGCAGG-ACGTACCG-CCC-TGGCGACGGAA 228 consensus_6029#1 CGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAA 298 ********** ********* ****** ****** ******** *** *********** consensus_6029#0 -GCGCTGACCGAGGCGGACGAAACGCT-GC-AGATCATCC-TGATT-GTGGTATCGG-CG 277 consensus_6029#2 -GCGCTGACCGAGGCGGACGAAACGCT-GC-AGATCATCC-TGATT-GTGGTATCGG-CG 282 consensus_6029#1 AGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCG 358 ******************** ***** ** ********* ***** ********** ** consensus_6029#0 -GCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGG------CGTTCT-TCATCAAGATCC 329 consensus_6029#2 -GCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGG------CGTTCT-TCATCAAGATCC 334 consensus_6029#1 TGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCG 418 ** ******** ******************** * ***** ** * ** consensus_6029#0 GCAGCC--TAAATCGCCA---GCTGAAGG---CCCTGT-CCGCGACC--GACTTT-GGGT 377 consensus_6029#2 GCAGCC--TAAATCGCCA---GCTGAAGG---CCCTGT-CCGCGACC--GACTTT-GGGT 382 consensus_6029#1 GCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGT 478 ***** ******* ** ****** * ** *** *** *** ****** **** consensus_6029#0 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGC--GCAAC-GTGCCCAC--AACGAAC-A 431 consensus_6029#2 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGC--GCAAC-GTGCCCAC--AACGAAC-A 436 consensus_6029#1 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCA 538 ******************************** ***** *** *** ****** * consensus_6029#0 TCTTCTC--GATCGAGGGCTCCAATCC--GGTGCTTAACGATAACGAGTTCCGCGACCGG 487 consensus_6029#2 TCTTCTC--GATCGAGGGCTCCAATCC--GGTGCTTAACGATAACGAGTTCCGCGACCGG 492 consensus_6029#1 TCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTA-AGCCGG 597 **** ***************** **** * *** * **** consensus_6029#0 ATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGAC 547 consensus_6029#2 ATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGAC 552 consensus_6029#1 AAGGG--GTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGAC 655 * *** *** ***** * ** ** ** *** * *** consensus_6029#0 TTCAACGAC-GTGGACAGGG-ACATTTTCGCACCGAAG-CGAAAGGAGAGTCTT--AATC 602 consensus_6029#2 TTCAACGAC-GTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTC 611 consensus_6029#1 TAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAG-GAATTCNTTCCGAGAGGTACCTTANC 714 * *** * ** **** *** *** * ***** * consensus_6029#0 CCGCG--CTCCTGGAGCACATACGCCAG-CGTTCGCTAAACCCAATGGCGAACGGAACTG 659 consensus_6029#2 CCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC------------------ 653 consensus_6029#1 AGCAAAGTTCCGGGGGCA-AGAGGGGAACAGTTCCCCGGACGCGTTNTCC---------- 763 ** ** *** * * * * ** * * ** consensus_6029#0 ACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACG 719 consensus_6029#2 ------------------------------------------------------------ consensus_6029#1 ------------------------------------------------------------ consensus_6029#0 AGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGATGGTTTTATGTGCT 779 consensus_6029#2 ------------------------------------------------------------ consensus_6029#1 ------------------------------------------------------------ consensus_6029#0 GGTTTGGTGTTAATTTTAGCTGTAAATACATTT 812 consensus_6029#2 --------------------------------- consensus_6029#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||