These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA] [+] EMBL AL693635 [AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA] consensusID : consensus_6038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 569 fasta sequence [CCGACTGCTGGGAAAGTTCTTTCNGNTCCG--AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA] [+] EMBL BX619215 [CCGACTGCTGGGAAAGTTCTTTCNGNTCCG AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCT ] [+] EMBL BX605601 [ TCTTTC G TCCGTAAAATACACGTTTTTTCAACCATGAAAGACCAAGAGACGCCGCA GGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAATTGTTCTACGATGGGTATCATTCAGTCGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCACCCTGTCCACCGAGCGATCGGTTGATGAATATCTTCAAACAGGCCAATCAGATCGAACAATCGAAGGAAAGCAATCTGTTCCATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCGTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA] consensusID : consensus_6038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC] [+] EMBL AL935022 [AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC] consensusID : consensus_6038#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT] [+] EMBL AL933079 [CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6038#1 -----------CCGACTGCTGGGAAAGTTCTTTCNGNTCCGAAATACACATTTTTCCAAC 49 consensus_6038#2 AATCCGAGGGTACGACTGCTGGAAG-----TCTTCGTCCGTAAATACACATTTTTCCA-C 54 consensus_6038#0 ------------------------------------------------------------ consensus_6038#3 --------CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGC 52 consensus_6038#1 CATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGT 109 consensus_6038#2 CATGAAAGAC--AGAGACGCCGCATG-ATAAGAATTTGGTGAAATGCCGCGAACAGCTGT 111 consensus_6038#0 ------------------------------------------------------------ consensus_6038#3 ACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCAC-GCTGT 111 consensus_6038#1 ACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCA 169 consensus_6038#2 ACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCA 171 consensus_6038#0 ----------------------------------------------------AGATTGCC 8 consensus_6038#3 AC--GATCAT-ACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTG 168 * consensus_6038#1 CCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCA 229 consensus_6038#2 ACNAACTGGTGCGTGC-GATCCTCCCTGTC-ACGGAGCGAC-GGTTGATGAACATCTTCA 228 consensus_6038#0 CNGGTTTNTTNCGTNC-GATC-TCCCTGTC-AC-GNTCGACTGGTTGATCAACATCTTCA 64 consensus_6038#3 CCT--CGGGGTCACGCTGATACTAC------ACCGTGGAAGCTGT--AACGACATTTCCG 218 * * *** * * ** * * ** * **** * * consensus_6038#1 AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 289 consensus_6038#2 A--AGGGCAAC--AATC-AACAGTCAGAAACA----------CTGGCATATTGCC-TGTG 272 consensus_6038#0 AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 124 consensus_6038#3 AA-NATGCATCGGTAAAGAAGGCTCACAAGCGA------TGCCTGA-GCCTTGAA-TATG 269 * ** * * ** ** * * *** * ** consensus_6038#1 GGCTGGATCTCG-AGTTC-GAAAC---GGAAGGCTCAACG-CTA-GCACC---GGAACCG 339 consensus_6038#2 GGCTGGATCTCGCAGTTCCGAAAC---GGAAAGGTCAACGGCTA-GCGACCGTGAACCCG 328 consensus_6038#0 GGCTGGATCTCG-AGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGT 183 consensus_6038#3 GTCGTTGCCCCGGAGTT--GGCCC------GGCCTTGACN--TAANTTTC---AGGGCCA 316 * * * ** **** * * * ** ** * * consensus_6038#1 GCA-GCGTAC-GAGAC---TGCGTAC-GTGAC-GTCGCACAAGCAAGCCTGCCGAGC-GG 391 consensus_6038#2 GGA-GCGTAC-GAGACACTTGCGTACTGTGAC-GTCGCACAAGCCANCTGGCGAGCG-GG 384 consensus_6038#0 GCATGCGTACTGAGAC---TGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGG 240 consensus_6038#3 GGA-TTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAG 375 * * *** * * * * * * * * * * * consensus_6038#1 GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGC-AGCA--TGGAT----GC 440 consensus_6038#2 GTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTC--AC 442 consensus_6038#0 GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGACAGGCATGGANTGCAAGC 296 consensus_6038#3 GGTCCGTGCACGACG-GAAGACACA-AACGGTGGCTGCGGATGTACGAATGTA-----AC 428 * * ** * * ** * ** ***** *** * * consensus_6038#1 AAGCATAAAGATTTTGG-ACGTCGATCGG-ATGCTT-GCTAAAT--CGGCACCGGAA--G 493 consensus_6038#2 AGCTAAAAGANTTTTGG-ACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACG 501 consensus_6038#0 ATTAAANNGATTCTTGGCACGTCGATCGG-ATGCTT-GCTAAACT-CGGCACCGGAA-CG 352 consensus_6038#3 AG-TACGTGGCGCTAAN--TGCTCTCTGGTAAGC---GCAAATTACCCGCGCAAACATGC 482 * * * * ** ** ** ** * * * * consensus_6038#1 ACA-TGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTG-TACGATCA 551 consensus_6038#2 ACA-TNGAGCCCNGTCCTTAAC--CANCGACGCCCCNCCCGGTNCATAACG-CACCGCTG 557 consensus_6038#0 ACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCA 412 consensus_6038#3 ACAACAGGTGCAAGT--------------------------------------------- 497 *** * * ** consensus_6038#1 TACGGACGAAGTGTCGTA------------------------------------------ 569 consensus_6038#2 TTCGAGNC---------------------------------------------------- 565 consensus_6038#0 TACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGG 472 consensus_6038#3 ------------------------------------------------------------ consensus_6038#1 ------------------------------------------------------------ consensus_6038#2 ------------------------------------------------------------ consensus_6038#0 GTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAA 532 consensus_6038#3 ------------------------------------------------------------ consensus_6038#1 ------------------------------------------------------------ consensus_6038#2 ------------------------------------------------------------ consensus_6038#0 GGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTA 592 consensus_6038#3 ------------------------------------------------------------ consensus_6038#1 ---------- consensus_6038#2 ---------- consensus_6038#0 CGGATGACTA 602 consensus_6038#3 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||