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Anopheles gambiae
cluster # 6038 cluster # 6038       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6038#0 length = 602 sequences # 1  
consensus_6038#1 length = 569 sequences # 2  
consensus_6038#2 length = 565 sequences # 1  
consensus_6038#3 length = 497 sequences # 1  

consensusID : consensus_6038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence
                              [AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA]

[+] EMBL AL693635             [AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTAAANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGACTA]


>consensus_6038#0 AGATTGCCCNGGTTTNTTNCGTNCGATCTCCCTGTCACGNTCGACTGGTTGATCAACATC TTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCC TGTGGGCTGGATCTCGAGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAAC CGTGCATGCGTACTGAGACTGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGG GTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGACAGGCATGGANTGCAAGCATTA AANNGATTCTTGGCACGTCGATCGGATGCTTGCTAAACTCGGCACCGGAACGACACTGGA GCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCATACGGACG AAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGGGTCNNACG CGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAAGGCTCACA AGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTACGGATGAC TA



consensusID : consensus_6038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 569
fasta sequence
                              [CCGACTGCTGGGAAAGTTCTTTCNGNTCCG--AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA]

[+] EMBL BX619215             [CCGACTGCTGGGAAAGTTCTTTCNGNTCCG  AAATACACATTTTTCCAACCATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCCT                                                                                                                                                                                           ]
[+] EMBL BX605601             [                 TCTTTC G TCCGTAAAATACACGTTTTTTCAACCATGAAAGACCAAGAGACGCCGCA GGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCAATTGTTCTACGATGGGTATCATTCAGTCGCGGTAGAGCTCACCAACCTGGTGCGTGCCGATCCACCCTGTCCACCGAGCGATCGGTTGATGAATATCTTCAAACAGGCCAATCAGATCGAACAATCGAAGGAAAGCAATCTGTTCCATGATTTGCCCTGTGGGCTGGATCTCGAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTACGTGACGTCGCACAAGCAAGCGTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTGGCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTGTCGTA]


>consensus_6038#1 CCGACTGCTGGGAAAGTTCTTTCNGNTCCGAAATACACATTTTTCCAACCATGAAAGACC AGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGTACCGGATGATG ATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCACCAACCTGGTG CGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCAAACAGGCCAAC CAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTGGGCTGGATCTC GAGTTCGAAACGGAAGGCTCAACGCTAGCACCGGAACCGGCAGCGTACGAGACTGCGTAC GTGACGTCGCACAAGCAAGCCTGCCGAGCGGGTTGTTTCAGTGGCGATGGGCAGCTCGTG GCAACGGGCAGCATGGATGCAAGCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAA TCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACG CTGTACGATCATACGGACGAAGTGTCGTA



consensusID : consensus_6038#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence
                              [AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC]

[+] EMBL AL935022             [AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAAAGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGGTGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAATCAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAAAGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGTCGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGGTNCATAACGCACCGCTGTTCGAGNC]


>consensus_6038#2 AATCCGAGGGTACGACTGCTGGAAGTCTTCGTCCGTAAATACACATTTTTCCACCATGAA AGACAGAGACGCCGCATGATAAGAATTTGGTGAAATGCCGCGAACAGCTGTACCGGATGA TGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCAACNAACTGG TGCGTGCGATCCTCCCTGTCACGGAGCGACGGTTGATGAACATCTTCAAAGGGCAACAAT CAACAGTCAGAAACACTGGCATATTGCCTGTGGGCTGGATCTCGCAGTTCCGAAACGGAA AGGTCAACGGCTAGCGACCGTGAACCCGGGAGCGTACGAGACACTTGCGTACTGTGACGT CGCACAAGCCANCTGGCGAGCGGGGTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCA ACGGGCCAGCGATTGGATTCACAGCTAAAAGANTTTTGGACGTCCATCGGCGTGCTTTGC TAAANTCCGGAGCCGGGAACGACATNGAGCCCNGTCCTTAACCANCGACGCCCCNCCCGG TNCATAACGCACCGCTGTTCGAGNC



consensusID : consensus_6038#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT]

[+] EMBL AL933079             [CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCACGCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGCTCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGACNTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACGAATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACATGCACAACAGGTGCAAGT]


>consensus_6038#3 CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGCACCGGAAG ACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTACGATCATA CGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTGCCTCGGGGTCAC GCTGATACTACACCGTGGAAGCTGTAACGACATTTCCGAANATGCATCGGTAAAGAAGGC TCACAAGCGATGCCTGAGCCTTGAATATGGTCGTTGCCCCGGAGTTGGCCCGGCCTTGAC NTAANTTTCAGGGCCAGGATTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTA ACTATTTGGGGCCAGGGTCCGTGCACGACGGAAGACACAAACGGTGGCTGCGGATGTACG AATGTAACAGTACGTGGCGCTAANTGCTCTCTGGTAAGCGCAAATTACCCGCGCAAACAT GCACAACAGGTGCAAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6038#1      -----------CCGACTGCTGGGAAAGTTCTTTCNGNTCCGAAATACACATTTTTCCAAC 49
consensus_6038#2      AATCCGAGGGTACGACTGCTGGAAG-----TCTTCGTCCGTAAATACACATTTTTCCA-C 54
consensus_6038#0      ------------------------------------------------------------
consensus_6038#3      --------CCCGAGGCNNCATAAAGATTTTGGACGTCGATCGGATGCTTGCTAAATCGGC 52
                                                                                  

consensus_6038#1      CATGAAAGACCAGGAGACGCCGCAGGGATAAGAATTTGCTGAAATGCCGCGAACAGCTGT 109
consensus_6038#2      CATGAAAGAC--AGAGACGCCGCATG-ATAAGAATTTGGTGAAATGCCGCGAACAGCTGT 111
consensus_6038#0      ------------------------------------------------------------
consensus_6038#3      ACCGGAAGACATGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCAC-GCTGT 111
                                                                                  

consensus_6038#1      ACCGGATGATGATAAGCCAACTGTTCTACGATGGGTATCATTCAGTGGCGGTAGAGCTCA 169
consensus_6038#2      ACCGGATGATGATAAGCCNACTGTTCTACGATGGGTATCATTCNGTGGGGGTAGAGCTCA 171
consensus_6038#0      ----------------------------------------------------AGATTGCC 8
consensus_6038#3      AC--GATCAT-ACGGACGAAGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTG 168
                                                                          *       

consensus_6038#1      CCAACCTGGTGCGTGCCGATCCTCCCTGTCCACCGAGCGACCGGTTGATGAACATCTTCA 229
consensus_6038#2      ACNAACTGGTGCGTGC-GATCCTCCCTGTC-ACGGAGCGAC-GGTTGATGAACATCTTCA 228
consensus_6038#0      CNGGTTTNTTNCGTNC-GATC-TCCCTGTC-AC-GNTCGACTGGTTGATCAACATCTTCA 64
consensus_6038#3      CCT--CGGGGTCACGCTGATACTAC------ACCGTGGAAGCTGT--AACGACATTTCCG 218
                                 *   * ***  * *      ** *    *   **  *   **** * * 

consensus_6038#1      AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 289
consensus_6038#2      A--AGGGCAAC--AATC-AACAGTCAGAAACA----------CTGGCATATTGCC-TGTG 272
consensus_6038#0      AACAGGCCAACCAGATCGAACAGTCGAAGGAAAGCAATCTGTTCGATGATTTGCCCTGTG 124
consensus_6038#3      AA-NATGCATCGGTAAAGAAGGCTCACAAGCGA------TGCCTGA-GCCTTGAA-TATG 269
                      *      ** *   *   **   **  *                *     ***   * **

consensus_6038#1      GGCTGGATCTCG-AGTTC-GAAAC---GGAAGGCTCAACG-CTA-GCACC---GGAACCG 339
consensus_6038#2      GGCTGGATCTCGCAGTTCCGAAAC---GGAAAGGTCAACGGCTA-GCGACCGTGAACCCG 328
consensus_6038#0      GGCTGGATCTCG-AGTTCTGAAACTGTGAAGTGCTCAACTGCTATGCACCTGTGAACCGT 183
consensus_6038#3      GTCGTTGCCCCGGAGTT--GGCCC------GGCCTTGACN--TAANTTTC---AGGGCCA 316
                      * *     * ** ****  *   *          *  **   **     *       *  

consensus_6038#1      GCA-GCGTAC-GAGAC---TGCGTAC-GTGAC-GTCGCACAAGCAAGCCTGCCGAGC-GG 391
consensus_6038#2      GGA-GCGTAC-GAGACACTTGCGTACTGTGAC-GTCGCACAAGCCANCTGGCGAGCG-GG 384
consensus_6038#0      GCATGCGTACTGAGAC---TGCGTACTGTGACTGTCGCACAAGCAAGCCTGCCGACGCGG 240
consensus_6038#3      GGA-TTATACCACCAAATTTCCCTTAAACCCCAGGGGTGAACGTAACTATTTGGGGCCAG 375
                      * *    ***    *    * * *       * *  *   * *  *             *

consensus_6038#1      GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGC-AGCA--TGGAT----GC 440
consensus_6038#2      GTTGTNCTCACGTGGCGATGTGGCACGCTCGTGGCAACGGGCCAGCGATTGGATTC--AC 442
consensus_6038#0      GTTGTT-TCA-GTGGCGATG-GGCA-GCTCGTGGCAACGGGACAGGCATGGANTGCAAGC 296
consensus_6038#3      GGTCCGTGCACGACG-GAAGACACA-AACGGTGGCTGCGGATGTACGAATGTA-----AC 428
                      * *     ** *  * ** *   **     *****  ***          *        *

consensus_6038#1      AAGCATAAAGATTTTGG-ACGTCGATCGG-ATGCTT-GCTAAAT--CGGCACCGGAA--G 493
consensus_6038#2      AGCTAAAAGANTTTTGG-ACGTCCATCGGCGTGCTTTGCTAAANTCCGGAGCCGGGAACG 501
consensus_6038#0      ATTAAANNGATTCTTGGCACGTCGATCGG-ATGCTT-GCTAAACT-CGGCACCGGAA-CG 352
consensus_6038#3      AG-TACGTGGCGCTAAN--TGCTCTCTGGTAAGC---GCAAATTACCCGCGCAAACATGC 482
                      *   *        *      *      **   **   ** **    * *  *    *   

consensus_6038#1      ACA-TGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTG-TACGATCA 551
consensus_6038#2      ACA-TNGAGCCCNGTCCTTAAC--CANCGACGCCCCNCCCGGTNCATAACG-CACCGCTG 557
consensus_6038#0      ACACTGGAGCCGGGTCGTGAACAGCACGCCCATCCGGTCATACGCACGCTGTCACGATCA 412
consensus_6038#3      ACAACAGGTGCAAGT--------------------------------------------- 497
                      ***   *   *  **                                             

consensus_6038#1      TACGGACGAAGTGTCGTA------------------------------------------ 569
consensus_6038#2      TTCGAGNC---------------------------------------------------- 565
consensus_6038#0      TACGGACGAAGGTATCCTATCTGGAGTTTCACCCGAAGGATCAAATACTTTGCCCTCGGG 472
consensus_6038#3      ------------------------------------------------------------
                                                                                  

consensus_6038#1      ------------------------------------------------------------
consensus_6038#2      ------------------------------------------------------------
consensus_6038#0      GTCNNACGCGGATCACAACCGTGAAGCTGTACGACCATTTCGAAAGCATCGGTCANAGAA 532
consensus_6038#3      ------------------------------------------------------------
                                                                                  

consensus_6038#1      ------------------------------------------------------------
consensus_6038#2      ------------------------------------------------------------
consensus_6038#0      GGCTCACAAGGTGCTGAATGATTGTGTAGCCGGTAGCCGCTGCATCGCGGTACATCCTTA 592
consensus_6038#3      ------------------------------------------------------------
                                                                                  

consensus_6038#1      ----------
consensus_6038#2      ----------
consensus_6038#0      CGGATGACTA 602
consensus_6038#3      ----------
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)