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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence
[ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCAATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAGATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCACTGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCACATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTAACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTTATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTGCAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAACAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAAAGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACNTATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCTATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAACGTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTATGGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA]
[+] EMBL AL693706 [ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCAATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAGATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCACTGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCACATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTAACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTTATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTGCAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAACAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAAAGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACNTATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCTATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAACGTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTATGGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA]
consensusID : consensus_6040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 634 fasta sequence
[CCGCCCACGCGTCCGAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC-TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGGCAAAAAAAAAAGTGCAGTCTTTCGGCTAACGTGTATGGGTTTGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAGTCAGAAATATGGCGCCGTGGACTAGGATA]
[+] EMBL BM611146 [CCGCCCACGCGTCCGAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCAAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGTCAAACAAAACAGTGCAGTCTTTCGGCTAACGTGTATGGGTTTGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAGTCAGAAATATGGCGCCGTGGACTAGGATA]
[+] EMBL CF541763 [ agctcAATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAACTTTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATANATCAGAAAGTAAAAGGCAAAAAAAAAA ]
[+] EMBL AF457562 [ TATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGCGCTGATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACAAACATGTAAAATTCACTCCACATGAAGTGACAGCTGGGAAAGCAAACGTATTGGTTCGGTATGAAGTATGCTAAAAAATCTGAGATTTTAATCTCGAACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAACTAAAAAC TTTAAATATATTTGAAAATGCGGACAAGCTATCCAAAATAGCGAGCAATAAATCAGAAAGTAAAAGGCAAAAAAAAAAaaaaaaaa ]
consensusID : consensus_6040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTAATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACCAGCATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGAATTGGTTCGGTATGAAGTATGCTAAAAAATCTGCGATTTTAATCTCACACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAAGACATAATTTCTCCCCCAAGACATTAGGTTTTTCAAAAA]
[+] EMBL BM610990 [CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGCAAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCAACAGGAGCTAATCCACTTCCGGGCAGAGACCGAAATACCATCGCAAACAAATCAAAAGATAAAAAAGCGAGCGCACCGAAACACTCGCTTGGAACGGGTGCTAGGATGGCACTGACTGGTGGCGGTGTTCTTGGCGGTGTATTAACCAGCATGTAAAATTCACTCCACATGAAGGGACAGCTGGGAAAGCAAACGAATTGGTTCGGTATGAAGTATGCTAAAAAATCTGCGATTTTAATCTCACACTTCATCGGTGATTTCACGAATAGTGTTTCTTATTGATTGGGAAGAATGCGCCAATAAGGTGCCGATACAGTGAGTAAATAAGACATAATTTCTCCCCCAAGACATTAGGTTTTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6040#1 CCGCCCACGCGTCCG---AATGTCGTAAGAAAAGTCCCGATGAAGTTTTATTCTGTGGGC 57
consensus_6040#2 -----CACGCGTCCGCTCAATCTCGTAAGAAAAGTCACGATGAAGTTTTATTCTGTGGGC 55
consensus_6040#0 -----------ATTGCCCCNCGTTTTAAGAAAAGTCACGATGAAGTTTTATTGTGTGGCA 49
* * *********** *************** *****
consensus_6040#1 AAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 117
consensus_6040#2 AAGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 115
consensus_6040#0 ATGCTGGTCAAGGTACTACTGGTAATGGCCGTGTGCTGCCTGCTGCTCTGCACCGCCCCA 109
* **********************************************************
consensus_6040#1 ACAGGCGCTGATCCACTTCC-GGGCAGAGACC-GAAATACCATCGCAAACAAATCAAAAG 175
consensus_6040#2 ACAGGAGCTAATCCACTTCC-GGGCAGAGACC-GAAATACCATCGCAAACAAATCAAAAG 173
consensus_6040#0 ACAGGAGCTGATCCACTGCCTGGGCAGAGACCTGAAATACCATCGCAAACAAATCAAAAG 169
***** *** ******* ** *********** ***************************
consensus_6040#1 ATAAAAAA-GCGAGCGCACC-GAAACACT-CGCT-TGGAACG-GGTGCTAG-GATGGCAC 229
consensus_6040#2 ATAAAAAA-GCGAGCGCACC-GAAACACT-CGCT-TGGAACG-GGTGCTAG-GATGGCAC 227
consensus_6040#0 ATAAAAAATGCGAGCGCACCTGAAACACTACGCTATGGAACGTGGTGCTAGTGATGGCAC 229
******** *********** ******** **** ******* ******** ********
consensus_6040#1 TGACTGGTGG--CGGTGTTCTT---GGCGGTGTATTAACAAACATGTAAAATTCACTCCA 284
consensus_6040#2 TGACTGGTGG--CGGTGTTCTT---GGCGGTGTATTAACCAGCATGTAAAATTCACTCCA 282
consensus_6040#0 TGACTGGTGTGCTGGTGTATCTATGGACGGTGTATTAACAAACATGTAAAATTCACTCCA 289
********* ***** * * ************ * ******************
consensus_6040#1 CATGA-AGTGACAG-CTGGGAAAG--CAAACGTATTGGTTCGG--TATGAAGTAT-GCTA 337
consensus_6040#2 CATGA-AGGGACAG-CTGGGAAAG--CAAACGAATTGGTTCGG--TATGAAGTAT-GCTA 335
consensus_6040#0 CATGACAGGGACAGGCTGGGCAAAGCCCAACGAATTGGTTCCGGTCATGANGTATTGCTA 349
***** ** ***** ***** ** * **** ******** * **** **** ****
consensus_6040#1 AAAAAT-----CTGAGATT-TTAATCTCGAACTTCATCGGTGATTTCACGA-ATAGTGTT 390
consensus_6040#2 AAAAAT-----CTGCGATT-TTAATCTCACACTTCATCGGTGATTTCACGA-ATAGTGTT 388
consensus_6040#0 ACACACAACTCTCGAGATTACTAATCTCAAACTTCATCGGTGATTTCACGACATAGTGTT 409
* * * * **** ******* ********************* ********
consensus_6040#1 --TCTTATTGATTG----GGAAGAATG----CGCCAA-TAAGGT---GCCGATAC-AGTG 435
consensus_6040#2 --TCTTATTGATTG----GGAAGAATG----CGCCAA-TAAGGT---GCCGATAC-AGTG 433
consensus_6040#0 ATCCTTATANGATNTTGCGGAAGAANATTGCCGCCAACTAANGTCTGACCGATACCAGTG 469
***** * ******* ****** *** ** ******* ****
consensus_6040#1 ---------------AGTAAATAACTA--------------------------------A 448
consensus_6040#2 ---------------AGTAAATAAGAC--------------------------------A 446
consensus_6040#0 CAGGTAACCTAAGACAATAAATNTCTACCCCCAAGGACCATTAAGGGTNNANTACAACAA 529
* ***** *
consensus_6040#1 AAACTTTAAATA-TATTTGAA-AATGCGGACA-AGCTATCC--AAAATAGCGAGCAATAA 503
consensus_6040#2 TAATTTC------TCCCCCAA-GACAT---TA-GGTTTTTC--AAAAA------------ 481
consensus_6040#0 CAGCTTTANATAATATTTGAACAATGCGGACACAGCTATACCAANAATAGCGAGCAATAA 589
* ** * ** * * * * * * * **
consensus_6040#1 AT--CAGAA-AGTAAAAGGCAAAAAAAAAAGTG-CAGTCTTTC----GGCTAA---CGTG 552
consensus_6040#2 ------------------------------------------------------------
consensus_6040#0 AGTACAGAACAGTAANAGTCAAGGCAAACAGTGGCAGGCCTATTACGGGCTAAACGNACN 649
consensus_6040#1 TATGGGTT-------TGAATGTCTTTTGCTCATGCAGCAAAATACATACTTTTACAGTAG 605
consensus_6040#2 ------------------------------------------------------------
consensus_6040#0 TATCGGTTATCGAATTGTCTATCTTTGGGTACAATTGCCAAGGACAAACTACGGTAACCT 709
consensus_6040#1 TCAGAAATATGGCGCCGTGGACTAGGATA------------------------------- 634
consensus_6040#2 ------------------------------------------------------------
consensus_6040#0 ATTAATAAACAAGTACGTCCAGNAAATNATTGGGCGCCGGTTGGACTTAAGGGGATTAAC 769
consensus_6040#1 ------------------------------------------------------------
consensus_6040#2 ------------------------------------------------------------
consensus_6040#0 GTCAACTTGGTNGCCCCTTGNANNAATATGGGNTAATATTGGCCCATACTTGNTCAGTAT 829
consensus_6040#1 -------------------------------------------------------
consensus_6040#2 -------------------------------------------------------
consensus_6040#0 GGTAGCACACNGGTCGAACTNGTTCGGCANAACTAAGCAAACTNANCGAACACCA 884
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||