These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1345 fasta sequence [AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTAGTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAGGAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC---AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTA---TAGGAAACGATC-GATCACT-TT--AAAAAAACA-GGAGAATTCTCGCATCA-GCCAATTTA-CTATTACTCTGATACTT-GAT-CTTGGAGAACTTGTAGCCTTTAATGACCAA-GTACCATCTTCAAA-GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATC-AACCAAGCATAATTATGAAACTAGTTAATTCTTT-CCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTTTTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATTTTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTAAACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCCACCATCGTTTGCTTTCCAACTTCCT] [+] EMBL BX469707 [AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTAGTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAGGAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTG TCATTCGTCGTA TAGGCAACGATCGGATCACTGTTAGAAAAAAACAGGGAGAATTCTCGCATCAGGCCAATTTACCTATTACTCTGATACTTGGATCCTTGGAGAACTTGTAGCCTTTAATGACCAAGGTACCATCTTCAAAGGCCGGTTCTT ] [+] EMBL BM620040 [ ccgACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGTAATGGGAATTGGGCTCTATAGCACCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAGATCCTGTCCAATAAGGATGCCGTAGAGTCCAATTTCCATCATTGGACAGTTCATCAGTTCACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTATTACTACTTGCATTGTTTTATCAGTCTACAGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCATCAAC AACAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTA TAGCAAACGATC GATCACT TT AAAAAAACA GGAGAATTCTCGCATCA GCCAATTTA CTATTACTCTGATACTT GAT CTTGGAGAACTTGTAGCCTTTAATGACCAA GTACCATATTCAAA GCACGTTCGTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATC AACCAAGCATAATTATGAAACTAGTTAATTCTTT CCCATGCGTCCGAT ] [+] EMBL BM620295 [ ccgGAGAATCTCATGAAGACCCTGTATGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTTGCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCAAACAAAAACCATTATATCAACAACAAAAAAAAAAACCGAATGTTCCATAGCGAGCAAGGACAAGGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGTTCATTCGTCGTACCGTTGTAAACGATC GATCACT TT AAAAAAACA GGAGAATTCTCGCATCA GCCAATTTA CTATTACTCTGATACTT GAT CTTGGAGAACTTGTAGCCTTTAATGACCAA GTACCATCTTCAAA GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATCAAACCAAGCATAATTATGAAACTAGTTAATTCTTTCCCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACT ] [+] EMBL BX609897 [ TAATGACCAA GTACCATCTTCAAA GCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCATCAAACCAA CATAATTATGAAATTAGTTAATTCTTTCCCCATGCGTCCGATTCGATTAGCTTTGCAGGACGAGTGAAGGAAAGTATGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGGAAATGGGACAGATTAGGATTAGCG TGCGATTACTATTGATTCGAACTTCAAAAGTTTAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTTTCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTTTTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATTTTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTAAACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCCACCATCGTTTGCTTTCCAACTTCCT] consensusID : consensus_6046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [CCGCCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGATGGTGACGGTTGGCATACTGTTCGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAGGTGCTGAGCATTATCTGCGGCGTGATTCCGCTCGTGTTCGGTGCGATCTTTTTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGGGACGGTACAGTGAAGCGGCCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACCTGAAG] [+] EMBL BM650308 [CCGCCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGATGGTGACGGTTGGCATACTGTTCGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAGGTGCTGAGCATTATCTGCGGCGTGATTCCGCTCGTGTTCGGTGCGATCTTTTTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGGGACGGTACAGTGAAGCGGCCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACCTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6046#0 AGCAGAATCGGCACGAGGCNCTTNTTCTGAGCGTGCTGAACCGTTGCTTGAAGGGTTTTA 60 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 GTGAAGGCATTTTCCTTTTAATTTTTCATCCTTGTTTCTGTTGTTTGCAGGGTTTTCCAG 120 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 GAGTTCTCATAGCTGTGGGACACTTGATTGACTCCTTCTTAAGTGAAATGAACCTAATGT 180 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 AATGGGAATTGGGCTCTATAGCATCCTCGTTGTGCAAATCTAATAAGAATTTCCAATAAG 240 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 ATCCTGTCCAATAAGGATGCCGTAGAGTCCATTTTCCATCATTGGACAGTTCATCAGTTC 300 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 ACTTCTCGTAAGAAAGAGTCAAGGAAGTGAGAACTATGAGAATCTCATGAAGACCCTGTA 360 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 TGTTAGTTTTGGGGTGTTTTACTTTACCTAACCTTCCCAAACGCCCAACTACTACTACTT 420 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 GCATTGTTTTATCAGTCTACTGAGGAGATTAGCAAAGTGAAATTAAATAGGGAAAAACCA 480 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 AACAAAAACCATTATATCATCAACAACAAAAACCGAATGTTCCATAGCGAGCAAGGACAA 540 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 GGGCAGCATATGTATGTGTCTGGCCGAAGGGATTGCAGTTGAAGGCGCAAGCAAATGTGT 600 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 TCATTCGTCGTATAGGAAACGATCGATCACTTTAAAAAAACAGGAGAATTCTCGCATCAG 660 consensus_6046#1 ---------------------------------------------------------CCG 3 * * consensus_6046#0 CCAATTTACTATTACTCTGATACTTGATCTTGGAGAACTTGTAGCCTTTAATGACCAAGT 720 consensus_6046#1 CCCACGCGTCCGAGCGCAGCCGTCGATTCGCGGTACGCTCGGCACGTTCTTTCAGCTGAT 63 ** * * * * ** ** ** * * ** * * * * consensus_6046#0 ACCATCTTCAAAGCACGTTCTTTTGCCTAGCCTGGCGTGTGTATAGATCTTTACCATCAT 780 consensus_6046#1 GGTGACGGTTG-GCATACTGTT----CGTGTACGCGGTGGGCGCCGGCGTCGACGTGCAG 118 * *** * ** * * * *** * * * ** ** consensus_6046#0 CAACCAAGCATAATTATGAAACTAGTTAATTCTTTCCCATGCGTCCGATTCGATTAGCTT 840 consensus_6046#1 GTGCTGAGCATTATC-TGCGGC------GTGATTCCGCTCGTGTTCGGTGCGATC--TTT 169 * ***** ** ** * * ** * * * ** ** * **** ** consensus_6046#0 TGCAGGACGAGTGAAGGAAAGTAGGGTTTTAGGAAAAAAGCTAACGATGTAGCAAATGGG 900 consensus_6046#1 TTCTTCATGCCCGAAAGCCCGTACTATTTCGTGGAAAAGG--GACGGTACAGTGAAGCGG 227 * * * * *** * *** *** * **** * *** * ** ** ** consensus_6046#0 AAATGGGACAGATTAGGATTAGCGGATGCGATTACTATTG--ATTCGAACTTCAAAAGTT 958 consensus_6046#1 CCAGCTCGCTGAAATGGCTCCGGGGCGCCCAGTACGACGAGAATGCGGAGATCGAAGACC 287 * * ** ** * * ** * * *** * ** ** * ** ** consensus_6046#0 TAGCTACCGTGCATTTTAGATTTCTACAATACCTCACTAACTAACGTTCTTTCCATTCTT 1018 consensus_6046#1 TGAAG------------------------------------------------------- 292 * consensus_6046#0 TCGTTGTGCTTCGTTGTCCGTCCCCCGCGTACTGTTTGGCAGTTGCAGAAGCATTTTTTT 1078 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 TTTGTTACAGAAAACTTGTTCAATAGGTTGTGTTTTGTTTAGTTTTATTTTAGATAGATT 1138 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 TTCCTTTGTTTTTGTCACTGCAATAATAGATTAATACTTTAGTGGAATGGATGGAGAGTA 1198 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 AACAATGAGATATACGAAGAAAATGATAAATGACAACTCTAGACACCGCAGCAAGTGTTG 1258 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 TTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTG 1318 consensus_6046#1 ------------------------------------------------------------ consensus_6046#0 CCACCATCGTTTGCTTTCCAACTTCCT 1345 consensus_6046#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||