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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1747 fasta sequence
[CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCACCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAAGCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGCTCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGT-CCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTAGGGAACGGTGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCCGGCACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATCCTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTTGATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTTTCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCGTTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAAAACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTGTGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGTATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATCGATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTATTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGAGTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAACATGCTAAGTAT]
[+] EMBL BM614357 [CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCACCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAAGCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGCTCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGT CCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTA ]
[-] EMBL BM617719 [ CTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGTCCCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTAGGGAACGGTGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCCGG ]
[+] EMBL BM628522 [ ccgGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGT ]
[+] EMBL BX608739 [ CGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATCCTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTTGATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTTTCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCGTTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAAAACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTGTGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGTATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATCGATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTATTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGAGTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAACATGCTAAGTAT]
consensusID : consensus_6047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTACTGATACTACACACGAGCACAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGGAACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA]
[+] EMBL AL693622 [GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTACTGATACTACACACGAGCACAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGGAACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6047#0 CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCA 60
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 CCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAA 120
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 GCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGC 180
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGG 240
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TCTGCGCTGGTCCATACGTCCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAA 300
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 GAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACA 360
consensus_6047#1 GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTA-CTGATACTACACA 59
*** * * ** ************************ *************
consensus_6047#0 CGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAA 420
consensus_6047#1 CGAGCAC-AATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAA 118
******* ****************************************************
consensus_6047#0 AAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTC 480
consensus_6047#1 AAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTC 178
************************************************************
consensus_6047#0 TTATTTTCTGTTGTATAGGAAACAAATTAT-CCCTTACTAAGAGTTGGGCAAGTTGAAAG 539
consensus_6047#1 TTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAG 238
****************************** *****************************
consensus_6047#0 CACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGG 599
consensus_6047#1 CACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGG 298
************************************************************
consensus_6047#0 TTCGATAGGAAAGAGGG-AAGAAGGATTTTAAAATCAATGGCACACGAT-CGTTGTAGGG 657
consensus_6047#1 TTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGG 358
***************** ******************************* **********
consensus_6047#0 AACGGTGGGAA-GCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTT 716
consensus_6047#1 AACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGT 418
*********** ******************************************** * *
consensus_6047#0 TTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACA 776
consensus_6047#1 TTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACA 478
************************************************************
consensus_6047#0 ATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTG 836
consensus_6047#1 ATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTG 538
************************************************************
consensus_6047#0 CCCACTCGGTTCGGTTCACTCACAGTTCCGGCACACACACAACCCTATCAAATTTATCGA 896
consensus_6047#1 CCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGA 598
**************************** *****************************
consensus_6047#0 TGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTA 956
consensus_6047#1 TGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTA 658
***************************************************** ******
consensus_6047#0 GTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAAT 1016
consensus_6047#1 GTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA------------------ 700
******************************************
consensus_6047#0 GTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAA 1076
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 CGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATC 1136
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 CTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTT 1196
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 GATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTT 1256
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCG 1316
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAA 1376
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 AACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTG 1436
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGT 1496
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 ATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATC 1556
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 GATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTA 1616
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 TTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGA 1676
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 GTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAAC 1736
consensus_6047#1 ------------------------------------------------------------
consensus_6047#0 ATGCTAAGTAT 1747
consensus_6047#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||