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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence
[CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC]
[+] EMBL BM655316 [CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGT ]
[+] EMBL BX625757 [ GTGATAGAGTTCTTCCACTAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATA ]
[+] EMBL BX626177 [ AAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTTGGAAGGCAAGGAAGATATACAGATGAGTTCTATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCCCAACAAGTCAATGACCTGTGAAGAGAGTGAAATAATGCTGGACGATACCGCTCAAGCCACTCCAGATGATAGTCCACTAGACGATACCGCTCAAACAAAAGCTGAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGAGGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTAAATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC]
consensusID : consensus_6048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence
[TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGATTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATA]
[+] EMBL BX608642 [TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGATTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATA]
consensusID : consensus_6048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[AATCGCAGAGGTTTAAGGTGTACTTAAAGATCCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTACATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTGGTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAAGAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTCANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAATCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCTCAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTGGCTGCACGGTAGACGGTGATCAAGA]
[+] EMBL AL696311 [AATCGCAGAGGTTTAAGGTGTACTTAAAGATCCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTACATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTGGTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAAGAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTCANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAATCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCTCAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTGGCTGCACGGTAGACGGTGATCAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6048#0 --------CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGG 52
consensus_6048#1 TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGG 60
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 CATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCT 112
consensus_6048#1 CATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCT 120
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 GCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGG 172
consensus_6048#1 GCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGG 180
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 AAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGAT 232
consensus_6048#1 AAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGAT 240
consensus_6048#2 -----------------------------AATCGCAGAGGTTTAAGGTGTACTTAAAGAT 31
* * * *****************
consensus_6048#0 CCACAGT--GATGTGATAGAGTTCTTCCACGAGCAGGG-CATCAA-TCAGGTTACCATTC 288
consensus_6048#1 CCACAGT--GATGTGATAGAGTTCTTCCACGAGCAGGG-CATCAA-TCAGGTTACCATTC 296
consensus_6048#2 CCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTAC-ATTC 90
****** **************************** ****** ********* ****
consensus_6048#0 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCC-TAGGCAGTGGTACGGAGTGCT-G 346
consensus_6048#1 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCC-TAGGCAGTGGTACGGAGTGCT-G 354
consensus_6048#2 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTG 150
************************************ ** ****************** *
consensus_6048#0 CTTGATCCAGTGCCGAAC-GATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGT 405
consensus_6048#1 CTTGATCCAGTGCCGAAC-GATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGT 413
consensus_6048#2 GTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGT 210
***************** ***** *********** ***********************
consensus_6048#0 CCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGG-AA 464
consensus_6048#1 CCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGG-AA 472
consensus_6048#2 CCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAA 270
********** * * ***************************************** **
consensus_6048#0 GAGAGTAAAGTTGAG-TCGGAAGGCA-AGGAAGATATACA-GATGAGTTCAATGTCGGCA 521
consensus_6048#1 GAGAGTAAAGTTGAG-TCGGAAGGCA-AGGAAGATATACA-GATGAGTTCAATGTCGGCA 529
consensus_6048#2 GAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCA 330
*************** ********** ************* *******************
consensus_6048#0 GTGAAATCATCCAGTGAG-GTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTC 580
consensus_6048#1 GTGAAATCATCCAGTGAG-GTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTC 588
consensus_6048#2 GTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTC 390
****************** ********************** ******************
consensus_6048#0 AA-TGACCTGTGAAGA-GAGTGAAATAACACTGGAC-GATGCCGCTCAAGCCACTCCAAA 637
consensus_6048#1 AA-TGACCTGTGAAGA-GATTGAAATAACACTGGAC-GATGCCGCTCAAGCCACTCCAAA 645
consensus_6048#2 ANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAA 450
* ************* ** **** *********** **************** ******
consensus_6048#0 T-GATAGTCCACTAGACGATACCGCGCAAACAAA-CGCT--AAGAAGAG-CACC-GT-CT 690
consensus_6048#1 T-GATAGTCCACTAGACGATACCGCGCAAACAAA-CGCT--AAGAAGAG-CACC-GT-CT 698
consensus_6048#2 TCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCT 510
* ******************************** **** * ****** **** ** **
consensus_6048#0 CAGCCACAG-------TACAAATAAGCCCAGTT--AAGACTGAA--TGCGAGCAGG--TG 737
consensus_6048#1 CAGCCACAG-------TACAAATAAGCCCAGTT--AAGACTGAA--TGCGAGCAGG--TG 745
consensus_6048#2 CAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTG 570
*** ***** * ** ****** ******** ******* * **
consensus_6048#0 GC-GCA-GGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATT 795
consensus_6048#1 GC-GCA-GGTAGACGGTGATA--------------------------------------- 764
consensus_6048#2 GCTGCACGGTAGACGGTGATCAAGA----------------------------------- 595
** *** *************
consensus_6048#0 ACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCG 855
consensus_6048#1 ------------------------------------------------------------
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 TATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCG 915
consensus_6048#1 ------------------------------------------------------------
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 AAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTAC 975
consensus_6048#1 ------------------------------------------------------------
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 GCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGC 1035
consensus_6048#1 ------------------------------------------------------------
consensus_6048#2 ------------------------------------------------------------
consensus_6048#0 ATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC 1073
consensus_6048#1 --------------------------------------
consensus_6048#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||