These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence [CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG-AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGTTGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACCAGCGTGAAGAAGGAATTG] [+] EMBL BM575495 [CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCATGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTATAATGTGGCCAAGAATGAGTGGAAAGCGCTGAAATCCTCCATCTGTCCGGCACCGCGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAATTCTACCACTTCCGCGACCTCTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATTAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAA ] [+] EMBL BX622944 [ GGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGA ] [+] EMBL BX624035 [ TTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGTTGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACCAGCGTGAAGAAGGAATTG] [+] EMBL BX602660 [ TCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACGAAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCT ] consensusID : consensus_6050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGGACGCACTTTGGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTTCGT] [+] EMBL BM611280 [CCGGACGCACTTTGGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6050#0 CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCC 60 consensus_6050#1 -----------CCGGACGCACTTTGGT-----------TTTTTGCACACTTTTCACCCCC 38 * ************* ********************** consensus_6050#0 CAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCAT 120 consensus_6050#1 CAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCAT 98 ** ********************************************************* consensus_6050#0 GAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGA 180 consensus_6050#1 GAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGA 158 ************************************************************ consensus_6050#0 AGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCAC 240 consensus_6050#1 AGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCAC 218 *** ************** ***************************************** consensus_6050#0 CGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGC 300 consensus_6050#1 CGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGC 278 ************************************************ *********** consensus_6050#0 CGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCAT 360 consensus_6050#1 CGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCAT 338 ************************************************************ consensus_6050#0 CTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTC 420 consensus_6050#1 CTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTC 398 ************************************************************ consensus_6050#0 CATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCA 480 consensus_6050#1 CATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCA 458 ********************* ************************************** consensus_6050#0 GATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCG 540 consensus_6050#1 GATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCG 518 ************************************ *********** *********** consensus_6050#0 CGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGG 600 consensus_6050#1 CGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGG 578 ************************ ******************** ************** consensus_6050#0 TCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGG 660 consensus_6050#1 TCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTT-CGT---- 633 *************************************************** ** consensus_6050#0 CGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCT 720 consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 GGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGT 780 consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 TGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACC 840 consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 AGCGTGAAGAAGGAATTG 858 consensus_6050#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||