These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1563 fasta sequence [CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAGAAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGTTCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAATTAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGCAGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACGAAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAGAGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTGGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCACGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGAGCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTATTTGCAGAATGGCGCGCACACGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTC-CACCGCGGCCCAATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTCGACAGGGGCACT] [+] EMBL CNS095QG [CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAGAAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGTTCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAATTAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGCAGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACGAAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAGAGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTGGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCACGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGC ] [-] EMBL CNS095QF [ GATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGAGCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTATTTGCAGAATGGCGCGCACACGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTC CACCGCGGC ] [-] EMBL BM617328 [ GCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTCCCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACA GGGGAAGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTCGCACCGCGAGCCAATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTCGACAGGGGCACT] consensusID : consensus_6057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [GGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTCCGCCGGCGCCTTTTCCGGTTGGGTAGACACGCTCGACACCGGAAACCGATGTAAACTGACAAACGCGAGCGAGAACCTCGTCTGAACCGTCGTCTGTCTGCGCACGAAAACAAACTGCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAACTAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCGGCTTTAC] [-] EMBL BM638173 [GGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTCCGCCGGCGCCTTTTCCGGTTGGGTAGACACGCTCGACACCGGAAACCGATGTAAACTGACAAACGCGAGCGAGAACCTCGTCTGAACCGTCGTCTGTCTGCGCACGAAAACAAACTGCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAACTAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCGG ] [-] EMBL CNS09L2S [ ACGGTCAGTGAGAAAGAGTCACACACCGAGAG TTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCAGCTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6057#0 CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAG 60 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGT 120 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 TCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAAT 180 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 TAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGC 240 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACG 300 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAG 360 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTG 420 consensus_6057#1 -----------------------------------------------------------G 1 * consensus_6057#0 GTGCTTTCGCCCCAGAGACAAGCAGATTGCGCA-CGGAACGCGGTTTGCGGTTTAACCCT 479 consensus_6057#1 GTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCT 61 ********************************* ************************** consensus_6057#0 TACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGAC 539 consensus_6057#1 TACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGAC 121 ***************************** **************************** consensus_6057#0 TTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGT 599 consensus_6057#1 TTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGT 181 ************************************************************ consensus_6057#0 TTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGA 659 consensus_6057#1 TTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGA 241 ************************************************************ consensus_6057#0 TAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCA 719 consensus_6057#1 TAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCA 301 ************************************************************ consensus_6057#0 CACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTT 779 consensus_6057#1 CACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTT 361 ************************************************************ consensus_6057#0 TCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACT 839 consensus_6057#1 TCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTC 421 ***************************************** * * * consensus_6057#0 GTTTCGTGCGGCTT---GTCGAACAAGACCCGGTCGG-ACCCGGGACCGGAGTGCACCAA 895 consensus_6057#1 CGCCGGCGCCTTTTCCGGTTGGGTA-GACACGCTCGACACCGGAAACCGATGTAAACTGA 480 * ** ** ** * * *** ** *** *** * **** ** ** * consensus_6057#0 GGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGA 955 consensus_6057#1 CAAACGCGAGCGAG--AACCTCGTCTGAACCGTCGTCTGTCTGCGCACG-AAAACAAACT 537 * *** * * * * **** * ** *** ** * * * consensus_6057#0 GCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTAT-TTGCAGAATGGCGCGCAC 1014 consensus_6057#1 GCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAAC 597 ***** * ** ** * *** *** * * * * * * * *** * ** consensus_6057#0 A---CGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGG 1071 consensus_6057#1 TAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCG 657 ** ** *** * * ** ******* * * ** ** * * consensus_6057#0 AAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGA 1131 consensus_6057#1 CACCCGCTACTGCACTGGCGGCTCGTAATCAATCGGCTT-TAC----------------- 699 * * ** **** ** ** * ** ** consensus_6057#0 TTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGG 1191 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATG 1251 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 GTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAA 1311 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCG 1371 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 GGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACG 1431 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 ACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTCCACCGCGGCCC 1491 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 AATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTC 1551 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 GACAGGGGCACT 1563 consensus_6057#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||