These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCCCACGCGTCCGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGAGATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGCTGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATGCTTGTGTAAAAAAAAAATTACC] [+] EMBL BM616756 [CCGCCCACGCGTCCGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGAGATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGCTGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATGCTTGTGTAAAAAAAAAATTACC] consensusID : consensus_6070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 565 fasta sequence [CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGATATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG] [+] EMBL BM606563 [CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGATATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG] [+] EMBL BM620380 [ CCGGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTC ] [+] EMBL BM647309 [ ccgGTAATCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAGTAGTTGGTTAATAGGTG] [+] EMBL BM610273 [ ccgCTTTGGCTGATTGTGAAATCGACTAAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAGGAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAAATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCGATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCAAGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAGGCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGTAAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAATAACGAGAATAGTTGGTTAATAGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6070#0 ------------------------------------------------------------ consensus_6070#1 CCGCGGACGCGTGGGTGCGGCATGACAGCGGGTGCTGTCATTTCCGTCTTGTCGCACGAT 60 consensus_6070#0 --------CCGCCCACGCGTCC-GAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACT 51 consensus_6070#1 ATTATTGTTTACAATCTTTTCCAGAAAGTACGTAATCTTTGGCTGATTGTGAAATCGACT 120 * * *** ************************************* consensus_6070#0 AAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAG 111 consensus_6070#1 AAATCATGACATCCTCGATCATTCTGGCTGGGCTGGGCCTAGCCGTGGTTGGGTATGGAG 180 ************************************************************ consensus_6070#0 GAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAA 171 consensus_6070#1 GAAGAGCGCTAATGCGTCAAATGCCCAATGCCGCGACCAAAATGCAGGAAGCCCTGAAAA 240 ************************************************************ consensus_6070#0 ATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCG 231 consensus_6070#1 ATATGCCCAAGTTTGATGCTGAAATGATGGCCAGCTCGAAGTACTACCGTGGGGGATTCG 300 ************************************************************ consensus_6070#0 ATGCTAAAATGAACAAACGCGAAGCTTCCCTCATCCTGGGCGTAAGCCCATCCGCATCCA 291 consensus_6070#1 ATGCTAAAATGAACAAACGCGAAGCTTCCCTCATTCTGGGCGTAAGCCCATCCGCATCCA 360 ********************************** ************************* consensus_6070#0 AGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAG 351 consensus_6070#1 AGGCAAAGGTCAAGGATGCACACAAAAAGATTATGCTGTTGAATCATCCCGACCGTGGAG 420 ************************************************************ consensus_6070#0 GTTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGT 411 consensus_6070#1 GCTCCCCGTACTTGGCCGCCAAGATCAACGAGGCAAAGGACTTTATGGACAATACTAAGT 480 * ********************************************************** consensus_6070#0 AAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAAT 471 consensus_6070#1 AAAGCATTAGCTATGCGCAATAACGAGAATTGTACAAAGTATCAAATTATTCGATAAAAT 540 ************************************************************ consensus_6070#0 AACGAGAATAGTTGGTTAATAGGTGAAAAACTTCTGAGGGGTTTATTAGATTTTTGAGGA 531 consensus_6070#1 AACGAGAATAGTTGGTTAATAGGTG----------------------------------- 565 ************************* consensus_6070#0 GATGGTATCACAATAGACAATCCTCTCGAATTAGCTCTATCATTATGATGACTATCAGGC 591 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 TGAAGCGGTAATTAATTCGTACAGATAAATTGAAATTCATTCCAAGGATTTTTGGCAATG 651 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 CTTGTGTAAAAAAAAAATTACC 673 consensus_6070#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||