These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 908 fasta sequence [CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCCTACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAAGAAAACTGAGCTAGCATTCGT] [+] EMBL BM604588 [CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAAT ] [+] EMBL BM579692 [ ccgCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCCTACC ] [+] EMBL BM595695 [ ccgGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTCCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAG AAGCAATATTCACACGGATGCCTACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAAGAAAACTGAGCTAGCATTCGT] consensusID : consensus_6071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCTGGGAGGATTGGTTGATTTGTTCTAATTTAGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAATTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATTTCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTTTCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTACCAAGTTCATGATAGCAGAAAGGCTACCCAGTTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGT] [+] EMBL BM647445 [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCTGGGAGGATTGGTTGATTTGTTCTAATTTAGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAATTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATTTCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTTTCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTACCAAGTTCATGATAGCAGAAAGGCTACCCAGTTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGT] consensusID : consensus_6071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GGCAAGAATCGGCACGATNGAGTGGCGTGTAAGAAGGTATACCTCCTTTGGATCTGCCCGTCGCACAAGCATTTCGAGTGGTTTATCGACGTATTGCGGGATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTCTTCCATAAATTTGATCTTCGAACAACCATGCTGTACATTTGTGAAAATCACTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGGAGCCGCAAATGGCCGTACTTTATTCATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTGGTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGGTCGATCAANTCGGACAAACAGCACCAAGGTACTGGGCAGGGATTGGTTAGATTN] [+] EMBL BX467555 [GGCAAGAATCGGCACGATNGAGTGGCGTGTAAGAAGGTATACCTCCTTTGGATCTGCCCGTCGCACAAGCATTTCGAGTGGTTTATCGACGTATTGCGGGATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTCTTCCATAAATTTGATCTTCGAACAACCATGCTGTACATTTGTGAAAATCACTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGGAGCCGCAAATGGCCGTACTTTATTCATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTGGTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGGTCGATCAANTCGGACAAACAGCACCAAGGTACTGGGCAGGGATTGGTTAGATTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6071#0 CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGAT 60 consensus_6071#1 ------------------------------------------------------------ consensus_6071#2 ------------------------------------------------------------ consensus_6071#0 ATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTC 120 consensus_6071#1 -------CCGCCCACGCGTCCGCCCACG---CGTCCGCACAGGTATCCAAAATTGGAGTC 50 consensus_6071#2 ------------------------------------------------------------ consensus_6071#0 TTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAAC 180 consensus_6071#1 TTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAAC 110 consensus_6071#2 -----------------GGCAAGAATCGGCACGATNGAGT-GGCGTGTAAGAAGGTATAC 42 * * * * * ** *** *** * * ** ** consensus_6071#0 AAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTA---ATCGAAC 237 consensus_6071#1 AAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTA---ATCGAAC 167 consensus_6071#2 CTCCTTTGGATCTGCCCGTCGCACA---AGCATTTCGAGTGGTTTATCGACGTATTGCGG 99 * * ** **** * * ******** *** * * ** * consensus_6071#0 AACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGC 297 consensus_6071#1 AACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGC 227 consensus_6071#2 GATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTC 159 * * * **** **** * * * * ** * ** *** * * * consensus_6071#0 TATCGTTTAATCGCAACGC-ACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGA 356 consensus_6071#1 TATCGTTTAATCGCAACGC-ACCAGTC-TGGGAGGATTGGTTGATTTGTTCTAATTTAGA 285 consensus_6071#2 TTCCATAAATTTGATCTTCGAACAACCATG-------CTGTACATTTGTGAAAATC---A 209 * * * * * * * * ** * ** ** ****** *** * consensus_6071#0 AAGCGAAAGCGTGTCTC-GTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCG 415 consensus_6071#1 AAGCGAAAGCGTGTCTC-GTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCG 344 consensus_6071#2 CTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAG-CAGTGAATCATTTTG 268 * ** * * *** * ** *** *** *** ** ** * * * consensus_6071#0 TTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAG--- 472 consensus_6071#1 TTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAA 404 consensus_6071#2 GCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTC--CAAAAGAAGCATTCTTATGT--- 323 * ***** ** ** * * * *** * * ** * consensus_6071#0 -TTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTT 531 consensus_6071#1 TTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATT 464 consensus_6071#2 -ATCCAAAATTGG----AGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTC-ATG 377 * ** *** * ***** * * *** * * * *** * *** * consensus_6071#0 TCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTT 591 consensus_6071#1 TCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTT 524 consensus_6071#2 TCGGC-------ATGTGATGAAGTGAACAAGGAG--------CCGCAAATGGCCGTACTT 422 *** * ** * * * *** * ** ** * * *** ** consensus_6071#0 CCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTA 651 consensus_6071#1 TCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTA 584 consensus_6071#2 TATTC---ATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTG 479 * ** * * **** ** ** ** * ** * *** * consensus_6071#0 AAAAGCAAAAC--TAAATCCTATTCCTGC-CAAGTTCATGATAGCAGAAACGCTACCCAG 708 consensus_6071#1 AAAAGCAAAAC--TAAATCCTATTCCTAC-CAAGTTCATGATAGCAGAAAGGCTACCCAG 641 consensus_6071#2 GTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGG 539 * * ** * *** ** * * *** * ** * * ** **** * * consensus_6071#0 TTCACGA-TAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAA 767 consensus_6071#1 TTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAA 701 consensus_6071#2 TCGATCA-ANTCGGACAAACAGCACCAAGGTAC---TGGGCAGGGATTGGTTAGATTN-- 593 * * * ** * * * * * * ** ***** ** consensus_6071#0 AGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCC 827 consensus_6071#1 AGT--------------------------------------------------------- 704 consensus_6071#2 ------------------------------------------------------------ consensus_6071#0 TACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAA 887 consensus_6071#1 ------------------------------------------------------------ consensus_6071#2 ------------------------------------------------------------ consensus_6071#0 GAAAACTGAGCTAGCATTCGT 908 consensus_6071#1 --------------------- consensus_6071#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||