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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGAACAAAACGTCAAGAAACAGAGAGCACAAAGTTTGGAAGCGTGAGGATCGCGTCGCGTTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTTCGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAAAGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGAAGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGCGTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGCCGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGTGCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCTGCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGGCAAATCTGCGCCTCAATTTCTGCTCAATGTCTACGATCAACTGCAGCAGGAGGAGAACGACGCGCCAGCCGGGGCTGGCCGGATACGAAAGGTTCGTAGCACTGACATGGACATCCTGATCACCGAAGCCGACAG]
[+] EMBL BM620822 [CCGAACAAAACGTCAAGAAACAGAGAGCACAAAGTTTGGAAGCGTGAGGATCGCGTCGCGTTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTTCGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAAAGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGAAGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGCGTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGCCGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGTGCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCTGCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGGCAAATCTGCGCCTCAATTTCTGCTCAATGTCTACGATCAACTGCAGCAGGAGGAGAACGACGCGCCAGCCGGGGCTGGCCGGATACGAAAGGTTCGTAGCACTGACATGGACATCCTGATCACCGAAGCCGACAG]
consensusID : consensus_608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCGGTCGCGTTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTTCGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAAAGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGAAGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGCGTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGCCGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGTGCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCTGCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGGGTAGGTGTACTGGCCGCGCGTTTGGTTCCATCGGTGCAAACGCTCCTGTGCGACTGTCTCACTCTCTCTCTGTCTCTCCGTGCCGTTCTGTGCTGATATGTTCGGTTTTTGTCTTCCTCCAGCAAATCTGCGCCTCAATTTCTGCTCAATGTCTACGAT]
[+] EMBL BM641518 [CCGGTCGCGTTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTTCGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAAAGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGAAGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGCGTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGCCGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGTGCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCTGCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGGGTAGGTGTACTGGCCGCGCGTTTGGTTCCATCGGTGCAAACGCTCCTGTGCGACTGTCTCACTCTCTCTCTGTCTCTCCGTGCCGTTCTGTGCTGATATGTTCGGTTTTTGTCTTCCTCCAGCAAATCTGCGCCTCAATTTCTGCTCAATGTCTACGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_608#0 CCGAACAAAACGTCAAGAAACAGAGAGCACAAAGTTTGGAAGCGTGAGGATCGCGTCGCG 60
consensus_608#1 ---------------------------------------------------CCGGTCGCG 9
* ******
consensus_608#0 TTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTT 120
consensus_608#1 TTGTGTGTGCGTGCTTCTTTTTGTGTGTTTGTGTGTGTTGTCTGCTGTTTCAATAGTTTT 69
************************************************************
consensus_608#0 CGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAA 180
consensus_608#1 CGGACGCGACCAAGGGGGCGACAATTCGGGTAAAAAGGTCGACTGGGTGTGCAAAGGGAA 129
************************************************************
consensus_608#0 AGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGA 240
consensus_608#1 AGTAACCAACTAACCAACCAATCAACCAACCAGCCAAACCCATCCACCTCGCATCGCTGA 189
************************************************************
consensus_608#0 AGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGC 300
consensus_608#1 AGTTTGAAGCTCGAGTGTGTGCATGAACGCGTCGAGTATGGGCCGTGCACTGGGGCTAGC 249
************************************************************
consensus_608#0 GTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGC 360
consensus_608#1 GTTCAGGGTGGCGATGGGCTGTCTGCTGCTGCTCGGCTGTTGGACGCCTGAGGCCACCGC 309
************************************************************
consensus_608#0 CGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGT 420
consensus_608#1 CGCGACGGCGACATCTACGCTGTCCGGCATCTACGTCGATAATGGCGTCGGTCAGACCGT 369
************************************************************
consensus_608#0 GCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCT 480
consensus_608#1 GCTGGAGGACACGCTCACGTACGAGGAGCAGCAGGAGATCGAGAACGAAATACTGAACCT 429
************************************************************
consensus_608#0 GCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGG-CAAAT 539
consensus_608#1 GCTCGGACTTCCGGGGCCGCGGCCGGCCGTCCGCCATCTACATTCCTCGGTCGGGTAGGT 489
****************************************************** * *
consensus_608#0 CTGC--GCCTCAATTTCTGCTC----------AATGTCTACGATCAACTGCAGCAGGAGG 587
consensus_608#1 GTACTGGCCGCGCGTTTGGTTCCATCGGTGCAAACGCTCCTGTGCGACTGTCTCACTCTC 549
* * *** * ** * ** ** * * * **** **
consensus_608#0 AGAACGACGCGCCAGCCGGGGCTGGCCGGATACGAAAGGTTCGTAGCACTGACATGGACA 647
consensus_608#1 TCTCTGTCTCTCCGTGCCGTTCTGTGCTGATATGTTCGGTTTTTGTCTTCCTCCAGCAAA 609
* * * ** * * *** * **** * **** * * * * * *
consensus_608#0 TCCTGATCACCGAAGCCGACAG----------- 669
consensus_608#1 TCTGCGCCTCAATTTCTGCTCAATGTCTACGAT 642
** * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||