These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 918 fasta sequence [CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAATATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCT-GCGCAC-GC-AATGCTTCGTTAGTAAGGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAAAGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTTGGAAATGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCAGCATGAACGAAACGACTGCAAGTTG] [+] EMBL BX467871 [CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAATATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCTGGCGCACGGCAAATGCTTCGTTAGTAAGGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAAAGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTTGGAAA ] [+] EMBL BX628555 [ CTGCTATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGNCGTTTGAAGCT GCGCAC GC AATGC ] [+] EMBL BX622163 [ ACCAAACGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCCCGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTAAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGAAGCGATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAAAGCACGTTGTGCCACCTTTCTCGGCCGTTTGAAGCT GCGCAC GC AATGCTTCGTT GT ANGGCGGNC TTTCGAA GCC AGC AG TGG CA GGGT AG CC GTGTTT GCCCAAA CC ATCC TACCC GATGGCG AGCT GGG NCACT CGTG TGAGCT GG TCTGGGAAGTGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCAGCATGAACGAAACGACTGCAAGTTG] consensusID : consensus_6082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [GCCCGAGGTNATATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCCCGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGCGATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAGCACGTTGTNACCACCTTTCTCGGCCGTTGANGCTGCGCACCGCAATGNTTCGTTGTAGGGCGGCTTTCAAGCCACGGTG] [+] EMBL AL935021 [GCCCGAGGTNATATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGACATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCGGTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAACACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCCCGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACACCAGGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGGGAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATCGGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAATAAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGCGATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAGCACGTTGTNACCACCTTTCTCGGCCGTTGANGCTGCGCACCGCAATGNTTCGTTGTAGGGCGGCTTTCAAGCCACGGTG] consensusID : consensus_6082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence [TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACACCATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGGGAA] [+] EMBL BX628544 [TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACACCATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6082#0 CAAGAATCNCGCACGAGGTGTGGTTTGTCAACAAATCGAATCACAACAGTAGCATAAAAT 60 consensus_6082#1 ------------------------------------------------GCCCGAGGTNAT 12 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 ATGAGCGATGCTGCCATACCGGTAAATCAAATTAAAACCGAACCAAACGCCGACGAAGAC 120 consensus_6082#1 ATGAGCGATGCTGCCCTACCGGTAAATCAAATTAAAACCGAACCAAATGCCGACGAAGAC 72 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 ATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCG 180 consensus_6082#1 ATCGAGGAGAAGCTGCCGGCGTACAGAGTGTGTGCGGAAAGTAAACTTATACACGCATCG 132 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 GTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAAC 240 consensus_6082#1 GTGGAAATAGTCGATCTCACCGAGGAGGACTTTCTGAACGAATTCAAATGCTTCCTCAAC 192 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 ACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCCAAGGCC 300 consensus_6082#1 ACCCTGCCCGACCGACGCCTTGACGTCGAGGCGAGAAGAACCGGCACCAATGCAAAGGCC 252 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 CGCACCATCCGATATGTTTTGCCCATACCGGCTCTCCTGCTTGCCCAGGTTCGAATACAC 360 consensus_6082#1 CGCACTATCCGATATGTTTTGGCCATACCGGCCCTCCTGCTGGCTCAAGTTCGAATACAC 312 consensus_6082#2 -------TCNGATATGGGTTGCCCATACCGGNTCTCCTGCTTGCCCAGGTTCTANTACAC 53 ** ****** *** ********* ******** ** ** **** * ***** consensus_6082#0 CA-GGACACGTTCATATGCGAGCTGTTTCGTATCAACTTCTCGAACACGATGCTGTACGG 419 consensus_6082#1 CA-GGACACGTTCATATGCGAGCTGTTTCGAATCAACTTCTCGAACACGATGCTGTACGG 371 consensus_6082#2 CATGGACACGTTCATATGCGAGCTGNTTCNTATCAACTTCTCGAACACGATGCTGTACGG 113 ** ********************** *** ***************************** consensus_6082#0 GAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATC 479 consensus_6082#1 GAAGCTAACGGCGGAAACGTTCCGCAATGATGTTACGGTGTATCAGCTTGATGATGGATC 431 consensus_6082#2 GAA--------------------------------------------------------- 116 *** consensus_6082#0 GGCAGCAGTGG-ATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTA-AAT 537 consensus_6082#1 GGCAGCAGTGGCATGTATATTATCGACCATCGAACAATAAAATGCTAGATAATTTCCAAT 491 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 AAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGG-AAGC 596 consensus_6082#1 AAGCTGCTTTGCTGTGAAGATACTCTTCGCCGGAAACCGTCCCCGCTGAACGAGGGAAGC 551 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 GATGCCAAGCTCTATCGAACTGAGGCGCCATCTCAGGATGCTGATTTCGATAGCGAA-AG 655 consensus_6082#1 GATTCCAAGCTCTATCGGAACTGAGCGCCATCTCAGGATGCTGAGTCGAGTAGCGAACAG 611 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 CACGTTGTG-CCACCTTTCTCGGCCGTTTGAAGCTGCGCAC-GCAATGCTTCGTTAGTAA 713 consensus_6082#1 CACGTTGTNACCACCTTTCTCGGCCGTT-GANGCTGCGCACCGCAATGNTTCGTTGT--A 668 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 GGGCGGCCTTTTCGAAAGGCCAAGCAAGTTGGCCAGGGGTAAGACCGGTGTTTGGCCCAA 773 consensus_6082#1 GGGCGGCTTTCAAGCCACGGTG-------------------------------------- 690 consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 AGCCAATCCATACCCGGATTGNGGAAGCTTGGGGCNCACTCCGTGTTGAACTCGGNTCTT 833 consensus_6082#1 ------------------------------------------------------------ consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 GGAAATGCTACCTACTTTCGGNGTACGAGCCTATGCTCAGTATGNTAGAANAACCGACCA 893 consensus_6082#1 ------------------------------------------------------------ consensus_6082#2 ------------------------------------------------------------ consensus_6082#0 GCATGAACGAAACGACTGCAAGTTG 918 consensus_6082#1 ------------------------- consensus_6082#2 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||