These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence [TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCACATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT-AACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAGCTGTG-TTTTTTTGGAGATTGGTTTTAGCAAG-TAACAGAAAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAG-AGTTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATAAATAGTGCCTTACGTTT] [+] EMBL BX618487 [TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCACATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT AACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAATAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATT ] [+] EMBL BX617034 [ CGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGTGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTTCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAGCTGTG TTTTTTTGGAGATTGGTTTTAGCAAG TAACAGAAAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAG AGTTGCTATTATTGATCATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAG ] [+] EMBL BM609514 [ ccgCTTTATTTAAACAAAAACAACGCTAGTGGTGCACAATTGCACCAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAACTGTGTTTTTTTTGGAGATTGGATTTAG AAGAGAACAG AAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCTTGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGGCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAGAATTTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAA ] [+] EMBL BM644767 [ ccgTACCACTAGTTCCTCCCTCACAGGCCAACATAG AATTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATAAATAGTGCCTTACGTTT] consensusID : consensus_6084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTACTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAACAGC] [+] EMBL AL934982 [AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTACTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6084#0 TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCA 60 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 CATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTG 120 consensus_6084#1 ------------AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTG 48 * * * *** ********************************** consensus_6084#0 ATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTT 180 consensus_6084#1 ATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTT 108 ************************************************************ consensus_6084#0 GTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT-AACAGGAATAGTAACAAA 239 consensus_6084#1 GTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAA 168 ******************** ******************* ****************** consensus_6084#0 ACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTC- 298 consensus_6084#1 ACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCC 228 *********************************************************** consensus_6084#0 GATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTA 358 consensus_6084#1 GATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTA 288 ************************************************************ consensus_6084#0 GTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTG 418 consensus_6084#1 CTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTG 348 * **************** ************** ***** ******************* consensus_6084#0 TCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACT 478 consensus_6084#1 TCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACT 408 ************************** ********************************* consensus_6084#0 AACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAA 538 consensus_6084#1 AACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAA 468 ************************************************************ consensus_6084#0 ACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAA 598 consensus_6084#1 ACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAA 528 ************************************************************ consensus_6084#0 CAGAA-AGCTGTGTTTTTTTGGAGATTGGTTTTAGCAAGTAACAGAAAAAATAACACCAA 657 consensus_6084#1 CAGAACAGC--------------------------------------------------- 537 ***** *** consensus_6084#0 AAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCA 717 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 GGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCG 777 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 TACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTT 837 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 AAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAGAGTTGCTAGTATT 897 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 GATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCT 957 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 CGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATA 1017 consensus_6084#1 ------------------------------------------------------------ consensus_6084#0 AATAGTGCCTTACGTTT 1034 consensus_6084#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||