These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 791 fasta sequence [GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG------TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGATCGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTTCACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCACATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGGTGCTTTCTACATCGTTTCCCAGT] [+] EMBL BM625880 [GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGT GCATTTTGCGGTTTTTAACCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCTTTTAGTTTTTTTTTTTTGCTATTTGGTAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTC AAACCCAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGGTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTAGAGCGGAAGCAACAACAAAGCTTCCACAAGGAAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTG ] [+] EMBL BM653239 [ ccgAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGACACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGG ] [+] EMBL BM653552 [ ccgAAAGTGTGTGTATCCCCTTCGTTTACGAATTTTCGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTCATAAAGCTTTTAG TTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAAGTGACTGTGAAGAAGACTTCCTCCCCCGGGGTACGTTTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGACACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTG ] [+] EMBL BM596683 [ ccgGTGAAGAAGACGTTCTCCCCCGGGGTACG TTTTGGTGAGGAGGTTCACGGTTGATTAGCGCTACGACTATTCGACTCTTTTGAGCGGAAGCAACAACAAAGCTTCCACAAGGGAGAAAGCAGTGTTTTGGGTAAACGACGAGAAGCATCCATCGCAGCTAAAAGATGACTGAAAGCGCAGGAGTGAAACAGATCGTCGGCGTCTCCGATATCACCGAGAACCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGATCGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTTCACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCACATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGGTGCTTTCTACATCGTTTCCCAGT] consensusID : consensus_6090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [GAATCGCCCCGAGGNTATCCCCTTCGTNTACGAANTTTTCGTGTGCATTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCACGGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTCCACAAGGGAGAAAGCAGCGTTAAACGACGAGAAGCNATCCATCGCAGCTAAACAGATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAACCGGAACATATG] [+] EMBL AL930253 [GAATCGCCCCGAGGNTATCCCCTTCGTNTACGAANTTTTCGTGTGCATTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAGTGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCTGTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTTCCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTTAACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCACGGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTCCACAAGGGAGAAAGCAGCGTTAAACGACGAGAAGCNATCCATCGCAGCTAAACAGATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAACCGGAACATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6090#0 GCCGTTGCAGGCTGCAGACCGCGTGGTTGAACCTGAAAAGTGTGTGTATCCCCTTCGTTT 60 consensus_6090#1 ----------------------------GAATC---GCCCCGAGGNTATCCCCTTCGTNT 29 *** * * * ************ * consensus_6090#0 ACGAATTTT-CGTGTTCATCATTTTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAG 119 consensus_6090#1 ACGAANTTTTCGTGTGCAT----TTGCAGTTTTTAATCGAAATCGTGTAGCTTCTTCAAG 85 ***** *** ***** *** ************************************* consensus_6090#0 TGGTTCATAAAGCTTTTAGTTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCT 179 consensus_6090#1 TGGTTTATAAAGCATTGTAGTGTTTGCTATTTTAAAACGTCTCGAGAGTGTCCGTGTTCT 145 ***** ******* ** **************************************** consensus_6090#0 GTATCCATCAGCACACTTCAAAATCGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTT 239 consensus_6090#1 GTATCCATCAGCACACTTCAAAATTGAAGGAGCACCCAGTGACGCCGTCAGTTCAGGCTT 205 ************************ *********************************** consensus_6090#0 CCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTT 299 consensus_6090#1 CCCGGTTGATTGAGCTGTCGAAAGTGTATCTGCCTGCCCGGAACGGCCGGTCCCAAAGTT 265 ************************************************************ consensus_6090#0 AA-GTGACTGTGAA-GAAGACTTCCTCCCCCGGGGTACGTTTTTGG-TGAGGAGGTTCAC 356 consensus_6090#1 AACGTGACTGTGAACGAAGACTTCCTCCCCCGGGGTACGTNNTTNGGTGAGGAGGTTCAC 325 ** *********** ************************* ** * ************* consensus_6090#0 GGTTGATT--AGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAA-CAAAGCTTC 413 consensus_6090#1 GGTTGAGTTAGGCGCTCCGACTATTCGACTCTTTTGAGCGGAAGCAACAAACAAAGCTTC 385 ****** * *************************************** ********* consensus_6090#0 CACAAGGGAGAAAGCAGTGTTTTGGTTAAACGACGAGAAGCA-TCCATCGCAGCTAAA-A 471 consensus_6090#1 CACAAGGGAGAAAGCAGC------GTTAAACGACGAGAAGCNATCCATCGCAGCTAAACA 439 ***************** ***************** *************** * consensus_6090#0 GATGACTGAA-AGCGCAGGAGTGAAACAGATCGTCGGCGTC-TCCGA-TATCACCGAGAA 528 consensus_6090#1 GATGACTGAACAGCGCAGGAGTGAAACAGATCGTCGGCGTCATCCGAGTATCACCGAGAA 499 ********** ****************************** ***** ************ consensus_6090#0 CCGCAACATATGGCGCATGCTGGTGGCCGAGTTTCTCGGCACCTTCTTTCTGGTGGCGAT 588 consensus_6090#1 CCGGAACATATG------------------------------------------------ 511 *** ******** consensus_6090#0 CGGCATCGGTAGCACGACCGGCTGGACCGACTACAGTCCCACGCTCACGCAGATTGCGTT 648 consensus_6090#1 ------------------------------------------------------------ consensus_6090#0 CACCTTCGGCCTGGTGGTCGCCACGCTTGCACAGGCATTCGGGCACGTGAGCGGATGCCA 708 consensus_6090#1 ------------------------------------------------------------ consensus_6090#0 CATCAATCCGGCCGTCACGATCGGGCTGATGGTAACGGCCGACGTCAGCATACTGAAGGG 768 consensus_6090#1 ------------------------------------------------------------ consensus_6090#0 TGCTTTCTACATCGTTTCCCAGT 791 consensus_6090#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||