These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6097#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTACATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCTGGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGCCGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCCTGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCGACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCGTACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGATTCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAATGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGGGCCCACCGGGTAAATGGGCCTGGATCCG] [+] EMBL BM657652 [CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTACATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCTGGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATTGCGCTGTGGAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTTCATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGCCGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCCTGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCGACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCGTACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGATTCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAATGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGGGCCCACCGGGTAAATGGGCCTGGATCCG] consensusID : consensus_6097#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATCGCGATCTACCAGGATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCAGGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGATCGCCTGGCTGTGGCGCATCTTTAACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAGTACCTGCGCATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGCCGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATACCTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTGTTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTCCCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGCGGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAACATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTTCCTTATTAAGCCTAAGA] [+] EMBL BM648312 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATCGCGATCTACCAGGATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCAGGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGATCGCCTGGCTGTGGCGCATCTTTAACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAGTACCTGCGCATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGCCGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATACCTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTGTTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTCCCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGCGGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAACATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTTCCTTATTAAGCCTAAGA] consensusID : consensus_6097#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATCGTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCTTGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCAGTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA] [+] EMBL BM611716 [CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATCGTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCTTGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCAGTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA] consensusID : consensus_6097#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GCAGATTCGGCACGATTGGGGCGTTCACCTTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCCAAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCGGTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAGGCCACGGTTGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGCGTTCGCGGCCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTTCGAGTTCCCCAACTTTGCCAACGGCA] [+] EMBL BX468434 [GCAGATTCGGCACGATTGGGGCGTTCACCTTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCCAAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCGGTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAGGCCACGGTTGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGCGTTCGCGGCCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTTCGAGTTCCCCAACTTTGCCAACGGCA] consensusID : consensus_6097#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [GGGGACGAGGCCGGCAGGAGAACAACCCGAAAACGGGGCCAGCCACAGAGAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCGAAACGGAAGGAAGCATCCGACCAGCGGACGGAAGCCGGGGAAGGGGGGCGCGAGACCACCCCA] [+] EMBL BX616389 [GGGGACGAGGCCGGCAGGAGAACAACCCGAAAACGGGGCCAGCCACAGAGAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCGAAACGGAAGGAAGCATCCGACCAGCGGACGGAAGCCGGGGAAGGGGGGCGCGAGACCACCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6097#1 ------------------------------------------------------------ consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 CCGCGCCGGATAAAGTCGTTCGCTAGCCCCTTTGTTTGAATTCGAATTTAAACACTCTAC 60 consensus_6097#2 ------------------------------------------------------------ consensus_6097#1 -----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCCA 31 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 -------------------------------GCAGATTCGGCACGATTGGGGCGTTCACC 29 consensus_6097#0 ATCAAAATGGGTAAGGAGAAGACTCATATTAACATCGTCGTCATCGGACACGTCGACTCT 120 consensus_6097#2 -------------CCGCGGACGCGTGGGGCAGCAGCAGCAACACACAACCCATCGTCATC 47 consensus_6097#1 CGCGTCCGGTGCTACACCGGCATGCTGGTGCTCAGCTCGACCGGCTGGAACCGGTACATC 91 consensus_6097#4 ------GGGGACGAGGCCGGCA----GGAGAACAACCCGAA-AACGGGGCCAGCCACAGA 49 consensus_6097#3 TTCCTGAAGGTGCTGAACAACATGGAGATCGGCGGCTCGCTGTTCGATGCCGAGGGTGCC 89 consensus_6097#0 GGCAAGTCGACCACCACCGGCCATTTGATCTACAAATGCGGCGGTATCGACAAGCGTACG 180 consensus_6097#2 GTCATCGTCCGTCATCACGCTCTCTTGCTCTGTCGATCTATCTTCTCGTGGGGGAGATCT 107 * * consensus_6097#1 GCGATCTACCAG-GATATGCTCGAGCGGGAGAATGTGACGCCGGCCCAGTACCTGCACCA 150 consensus_6097#4 GAAAACTGACAGAGACAGACACCAGGGCCGACGAACCAGAGCGGAGCGCGACCAGCACCG 109 consensus_6097#3 AAGATCGTGCAGAACCTGGTGGACAAGGCGAAGAAGAACAATGTGCAGCTGCACCTCCCG 149 consensus_6097#0 ATTGAGAAGTTCGAGAAGGAAGCTCAGGAGATGGGCAAGGGCTCGTTCAAGTACGCCTGG 240 consensus_6097#2 TGATACGCTTATCACCTGTGAAGCCGGTCTGCCACTAGCCGGTCCTAATCACGAGAGTCA 167 * consensus_6097#1 GGAGTCGGTGTTCCGGTCGACCGGGTTCTTCGTGAT-CGCCTGGCTGTGGC-GCATCTTT 208 consensus_6097#4 AAACGGAAGGAAGCATCCGACCAG-CGGACGGAAGC-CGGGGAAGGGGGGC-GCGAGACC 166 consensus_6097#3 GTTGACTTTGTGACGGGCGACAAGTTCGCGGAGGATGCGGCGACCGGCGAG-GCCACGGT 208 consensus_6097#0 GTGCTGGACAAGCTGAAGGCCGAGCGCGAGCGTGGTATCACCATCGATATT-GCGCTGTG 299 consensus_6097#2 GTCCGTGTTTCTTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTTGTAACTGTTGCGAA 227 * * consensus_6097#1 AACGTGCACGCGCTGCTCCACTTTCTGCTGCTGAGCGTGTTCTGTGATAAGCTGTGGGAG 268 consensus_6097#4 ACCCCA------------------------------------------------------ 172 consensus_6097#3 TGCCAGCGGCATCCCGGCCGGCCACATGGGCCTGGACATTGGGCCGAAGTCGCGCGAAGC 268 consensus_6097#0 GAAGTTCGAAACCTCCAAGTACTACGTCACCATCATCGACGCCCCCGGACATCGTGATTT 359 consensus_6097#2 CAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGAT 287 consensus_6097#1 TACCTGCG-CATGATCCAGTACGCCGGGTACGTGGCGCTGCTCGTGATCATCAGCTTCGC 327 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 GTTCGCGG-CCCGATCGCCCGCTCCAAGATCATCGTCTGGAACGGACCGCCCGGTGTGTT 327 consensus_6097#0 CATCAAGAACATGATCACGGGAACGTCGCAGGCCGATTGTGCCGTGCTGATCGTCGCCGC 419 consensus_6097#2 TAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCCGC 347 consensus_6097#1 CGAGATGCATCTGCTCGGCGTGCAGACGTTCATCTACAAGTCGCTCACGGTCAACAATAC 387 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 CGAGTTCCCCAACTTTGCCAACGGCA---------------------------------- 353 consensus_6097#0 CGGTACCGGCGAGTTCGAGGCCGGTATCTCGAAGAACGGACAGACCCGCGAGCACGCCCC 479 consensus_6097#2 GGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGAT 407 consensus_6097#1 CTCGTTGTGATTGCGCTAAACATTGCGCAAAAAAGCGCCTTGCGGGCTTGTCAACGATTG 447 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 TGCTTGCCTTCACCCTCGGCGTGAAGCAGCTGATTGTCGGCGTCAACAAGATGGGACTCG 539 consensus_6097#2 CGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGC 467 consensus_6097#1 TTGTTTTATTGACTCTTTTTATTTCAGTTTCATCATTTATTGTATTTTGTGTTTGTGTTC 507 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 ACCGAGCCGCCGTACAACGAGGCCCGCTTTCGAGGAAATCCAAGAAGGAGGGGGTCGTCG 599 consensus_6097#2 CAAGGGCCAGCAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGA 527 consensus_6097#1 CCCATACACGTGTGTGCCCACGTGTATATGTGTGTTTATGATTATATTATACAGGCGTGC 567 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 TACATCAAAGAAGAATCGGGTTTACAACCCCGGGCCGGCCGTCGCCGTTTCGTCCCCGAT 659 consensus_6097#2 GGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAA 587 consensus_6097#1 GGTGTGTAAGTGTTAGACATTTTCACCGCAAACCCCCTCCACCCTTTTCCGTCACTGAAA 627 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 TCTCCGGGGCCTGGGCACGGGCGAACAACATTGGCTTGGGAACCCGGCCCCCCCAAAGAA 719 consensus_6097#2 GCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCA- 646 consensus_6097#1 CATTACGAAAACCACGAAATTATTATCAACAAATGCTAAAACAATAAGCAGCCCTCCCTT 687 consensus_6097#4 ------------------------------------------------------------ consensus_6097#3 ------------------------------------------------------------ consensus_6097#0 TGGCCGGGGGGTTTCCAAGGGGATGGGGGCCCATCCGAAGCGCCCAAGGGAGGGGTAAGG 779 consensus_6097#2 ------------------------------------------------------------ consensus_6097#1 CCTTATTAAGCCTAAGA----------- 704 consensus_6097#4 ---------------------------- consensus_6097#3 ---------------------------- consensus_6097#0 GCCCACCGGGTAAATGGGCCTGGATCCG 807 consensus_6097#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||