These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 986 fasta sequence [CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGGTCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAAG--AATTC--CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTTCCGGCTGAGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTTCATCAACGGCCACAGCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAGTGGACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGGAATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAACAGATCTGCNAGCCTGNGNACACGANACGCCAACAC] [+] EMBL BM631050 [CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGGTCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAAGAAAATTC CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGT ] [+] EMBL BX467168 [ GGCCAAG AATTCGGCACGA TG GGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTTCCGGCTGAGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTTCATCAACGGCCACAGCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAGTGGACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGGAATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAACAGATCTGCNAGCCTGNGNACACGANACGCCAACAC] [+] EMBL BM638944 [ ccGCGAAA AATTC CTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCT ] consensusID : consensus_6098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 860 fasta sequence [CAAGAATCGGCACGAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTCCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAGGAATCGGGCCGAGCGGGACTTCGCATGTGTCGGGTGTGTATCACGCCAAGCGCTCAAGGATCAACCGGCAAGACAAAAAAGGCANACGGGGTCCCGGAAGTTTGAACAACGGGGGAAAACCTTTTAGGGTCCAACGGGGACAGTTCCCCTTTCCAGGAAATCCGGGGAACGNGNAACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGTTAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC] [+] EMBL BX467192 [CAAGAATCGGCACGAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGCACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCCCAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCTCGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGATCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAACAAGGATGTGTGCAGCTCCGACACAAATGCCTGCCTTCCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCAGGAATCGGGCCGAGCGGGACTTCGCATGTGTCGGGTGTGTATCACGCCAAGCGCTCAAGGATCAACCGGCAAGACAAAAAAGGCANACGGGGTCCCGGAAGTTTGAACAACGGGGGAAAACCTTTTAGGGTCCAACGGGGACAGTTCCCCTTTCCAGGAAATCCGGGGAACGNGNAACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGTTAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC] consensusID : consensus_6098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCTCCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCACGAATCGGCGAGCGGGACTTCGCATGTGTTCGGTGTGTTATCACGCCACGCGCTCAANGATCACGGCAGCAAAGCACGGTCCGAGTGACACGGAACTTTGTCACGGCATCCTTTCGTATCCGTTCGGTAAGGTCAATGGTTCGCAAAANTAAATGAAAAAACAAACA] [+] EMBL BX619526 [ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCATTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAATAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTACTATTTTCCGTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCGCTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCTCCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCATACCCCACGAATCGGCGAGCGGGACTTCGCATGTGTTCGGTGTGTTATCACGCCACGCGCTCAANGATCACGGCAGCAAAGCACGGTCCGAGTGACACGGAACTTTGTCACGGCATCCTTTCGTATCCGTTCGGTAAGGTCAATGGTTCGCAAAANTAAATGAAAAAACAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6098#0 CCGAACAAAGATTAACGACCGCATTTCACTTGCTGCCCGCGATTTCGACGATGTTTTGGG 60 consensus_6098#1 ------------------------------------------------------------ consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 TCTGGGCGGAATGGGGGTTTAGGGAAAAACCCCGGCGACGACGACGACGACGACGGCGAA 120 consensus_6098#1 ---------------------------------------------------------CAA 3 consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 GAATTCCTCGATATTTGACGCCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGC 180 consensus_6098#1 GAAT----CGGCAC--GAGGGCTCTTTGTGAAGGGCTCCGATTCAGTCGAACAATGGAGC 57 consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 ACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCC 240 consensus_6098#1 ACCACGCTGTTTGATGTTCCGTTGGTTTGGTTTTGCAGTGCAGTGGTGCTGACAGTGGCC 117 consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 CAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCT 300 consensus_6098#1 CAGCCTTTCGTCGACTTTTCACAATTATGTCTAGCTGCACACTGACTCTGTGACACGGCT 177 consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 CGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGA 360 consensus_6098#1 CGCCGTGCAAGACGGGGTAAAGAGGGCCCTCATGTTGAAGAATGATTACCCCGAAAGCGA 237 consensus_6098#2 ------------------------------------------------------------ consensus_6098#0 TCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 420 consensus_6098#1 TCGACATGTGGGTTGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 297 consensus_6098#2 --ACGAGGTGGGTNGGGGTTTTGGTTTGGCGTTGCTATGCCTATCAAACGCGGTAGCTCA 58 * ****** ********************************************** consensus_6098#0 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 480 consensus_6098#1 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 357 consensus_6098#2 TTAGGGGCTGCCTTGGTGTACCATATCTACCGTGGAAGTGGCAGGAAAAACTGCTTACAA 118 ************************************************************ consensus_6098#0 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 540 consensus_6098#1 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 417 consensus_6098#2 TAATTACCTACCACTAGCCAGCGCTCCGCCAGACACGTGCATGCCCGCAACATCGGTCTA 178 ************************************************************ consensus_6098#0 CTATTTTCCGT-GGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 599 consensus_6098#1 CTATTTTCCGTTGGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 477 consensus_6098#2 CTATTTTCCGT-GGTGTGGAATGCAATCCATAATGGCGAGTGTTGCATGTCCATGTGGCG 237 *********** ************************************************ consensus_6098#0 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAAC--AAGGATGTGTGCAGCT 657 consensus_6098#1 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATTACAAAAC--AAGGATGTGTGCAGCT 535 consensus_6098#2 CTCTCTTGCTGCTACTTCCACCTAGCAGGCATATNACAAAAACAAAGGATGTGTGCAGCT 297 ********************************** ****** **************** consensus_6098#0 CCGACACAAAT-GCCTG-CCTTTCCGGCTGAGG-AAGTGAGCGAGCGATCCTCGCTATCA 714 consensus_6098#1 CCGACACAAAT-GCCTG-CCTT-CCGGCTGAGGGAAGTGAGCGAGCGATCCTCGCTATCA 592 consensus_6098#2 CCGACACAAATTGCCTGGCCNTTCCGGCTGANGGAAGTGAGCGAGCGATCCTCGCTATCA 357 *********** ***** ** * ******** * ************************** consensus_6098#0 TACCCCAAAGAATCGGGCGAAGACNGGGGACCTTCGGCATGTGTACGGGTGTGTT-CATC 773 consensus_6098#1 TACCCCAG-GAATCGGGCCGAG---CGGGACTTC--GCATGTGT-CGGGTGTGTA-TCAC 644 consensus_6098#2 TACCCCAC-GAATCGG--CGAG---CGGGACTTC--GCATGTGT-TCGGTGTGTTATCAC 408 ******* ******* ** ***** * ******** ******* * consensus_6098#0 AACGGCCACA-GCGCTCCAAGNATCACGGCAGCAAAAGGCAACCGGGGACCCGAAG--TG 830 consensus_6098#1 GCCAAGCGCTCAAGGATCAACCGGCAAGACAA-AAAAGGCANACGGGGTCCCGGAAGTTT 703 consensus_6098#2 GCCACGCGCT-------CAANGATCACGGCAGCAAAGCACGGTCCGAGTGACA-----CG 456 * * * *** ** * ** *** * * * * * consensus_6098#0 GACCANCCGGGGCAAACTCTTGGGGGCCAAACCGGGGGGCANTTCCCCATTGAACCGCGG 890 consensus_6098#1 GAACAACGGGGGAAAACCTTTTAGGGTCCAAC--GGGGACAGTTCCCCTTT---CCAGGA 758 consensus_6098#2 GAACTTTGTCACGGCATCCTTTCGTATCCGTTC--GGTAAGGTCAATGGTT----CGCAA 510 ** * * ** * * ** * ** * consensus_6098#0 AATACCCCAGAACANGCGGCAAAAGGGGGTCACAACAACGGGGGTTCCCAGGCAGAGAAA 950 consensus_6098#1 AAT---CCGGGGAACGNGN---AACAGGGTCCCAAACACGGGGTATCTCGGCAAAAAAGT 812 consensus_6098#2 AANTAAATGAAAAAACAAACA--------------------------------------- 531 ** * consensus_6098#0 CAG-ATCTGCNAGCCTGNGNACACGANACGCCAACAC----------- 986 consensus_6098#1 TAACACTTGACACAANAACCANACGCAGTGGGGGNAACAAGGGAATCC 860 consensus_6098#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||