|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[GCAGAATCCCCCGAGGTTTAAAACGTGTGACACCGAAGCACGGTAACGACTCCCGCACTTACACCCGAACAGCTGCAGCAGTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGCTGCTGCACAGATTCCCTCGGTACTGACCTCCTCGAAGCCGGTGATTAAGCTAGAGACGGTGTACGAGTCGCACGTGCTGCCCATCATCAACGGTGCCAACACAATCCTCAGCACGATTTCGCTGCCCGATCGGTACGATCACCAAGACGAGCTACGAGCTTGTAACGACGACGCTGCCCATGCCTACCCATCCCTGCCGATTCCGCAGCTCAATCCGCTTCTACTGCAGCAGCAACAGCAGCAACAGTCGCTCCAGATTCAGTCGACACCCGTCGTCACGCAGACAATCGTCACCGAGACGAACAGTAAGGTGCTGAANGCTGACGTTTGGTGCTAAGACGGCNGTATACCACGCTCTACTCGACGACGGTGGTTCCAACTGGTGCTGACCACCTACTTGACCCAGTCGGTTTCCGTTCAACCGACTGGCAGCCGCTGCGTTCCCTGGATTCTTCCCCTAACCGTACGCACCGTTCCCGTTCGTCGGCTAAGGAGGAATGGAGCGAATTGACTTGCCTAGTNTGCTAATTTAGGATAACGAATTGACAGAGCAAAGAGATGGCGTGCACCTGAGAAGACGATCGTACAAGGGACAAACAGCTAATGCCACAACGAACAGTGAACACATCCCGGGC]
[+] EMBL AL931974 [GCAGAATCCCCCGAGGTTTAAAACGTGTGACACCGAAGCACGGTAACGACTCCCGCACTTACACCCGAACAGCTGCAGCAGTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGCTGCTGCACAGATTCCCTCGGTACTGACCTCCTCGAAGCCGGTGATTAAGCTAGAGACGGTGTACGAGTCGCACGTGCTGCCCATCATCAACGGTGCCAACACAATCCTCAGCACGATTTCGCTGCCCGATCGGTACGATCACCAAGACGAGCTACGAGCTTGTAACGACGACGCTGCCCATGCCTACCCATCCCTGCCGATTCCGCAGCTCAATCCGCTTCTACTGCAGCAGCAACAGCAGCAACAGTCGCTCCAGATTCAGTCGACACCCGTCGTCACGCAGACAATCGTCACCGAGACGAACAGTAAGGTGCTGAANGCTGACGTTTGGTGCTAAGACGGCNGTATACCACGCTCTACTCGACGACGGTGGTTCCAACTGGTGCTGACCACCTACTTGACCCAGTCGGTTTCCGTTCAACCGACTGGCAGCCGCTGCGTTCCCTGGATTCTTCCCCTAACCGTACGCACCGTTCCCGTTCGTCGGCTAAGGAGGAATGGAGCGAATTGACTTGCCTAGTNTGCTAATTTAGGATAACGAATTGACAGAGCAAAGAGATGGCGTGCACCTGAGAAGACGATCGTACAAGGGACAAACAGCTAATGCCACAACGAACAGTGAACACATCCCGGGC]
consensusID : consensus_611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGGGAGACGGCCACCATCACACCGTCGCTAACGGAACCACTGACTGAGAACATTTTGGCCACTACGACGCACATTGACAAGGAGAGCAATTTGTTGGACTCGAGCATTGCCACACTGCCTCCGATTGTGCTGGGCCTTGACACGGAGACGCCACCACTTGAAACGCTAACGGAAACGTTCAGCACTACCCAGGCCATGCTTAAGACGCACATTCTGCCTGTTATCCGAGAAGGCGATACTACCAGCTACACCCTCATTCAAACCTACCATGTGACGCGTCTAGTCACTGCCACCAAAACGTTGCCACCGATGGAGCTGTACCATTTCGTACCGTCGCGCACACTGAACGAGTTCAACAGCCGATTGGACGAGGCAGGATCCGAGCTACACCTGGAGCTGGAGTTTGGTGATGACAACGAGAACGATGACGAGGATAAGCCCAAGCGCGAACGGCTACCATCCGATCTGGACCTCTCGAACATTGGGTCCGACTTTGACCTGTCCGAGGTGGACAAGACAAACATCCCGGAGAACATTCGACCGAAGAAGAAGATCACGGGAAGCAACAAGGAAAACCGTGTGACCACCGAAGCACCGGTAACGACTCCCGCACTTACACCCGAACAGCTGCAGCAGTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGC]
[+] EMBL BM635469 [CCGGGAGACGGCCACCATCACACCGTCGCTAACGGAACCACTGACTGAGAACATTTTGGCCACTACGACGCACATTGACAAGGAGAGCAATTTGTTGGACTCGAGCATTGCCACACTGCCTCCGATTGTGCTGGGCCTTGACACGGAGACGCCACCACTTGAAACGCTAACGGAAACGTTCAGCACTACCCAGGCCATGCTTAAGACGCACATTCTGCCTGTTATCCGAGAAGGCGATACTACCAGCTACACCCTCATTCAAACCTACCATGTGACGCGTCTAGTCACTGCCACCAAAACGTTGCCACCGATGGAGCTGTACCATTTCGTACCGTCGCGCACACTGAACGAGTTCAACAGCCGATTGGACGAGGCAGGATCCGAGCTACACCTGGAGCTGGAGTTTGGTGATGACAACGAGAACGATGACGAGGATAAGCCCAAGCGCGAACGGCTACCATCCGATCTGGACCTCTCGAACATTGGGTCCGACTTTGACCTGTCCGAGGTGGACAAGACAAACATCCCGGAGAACATTCGACCGAAGAAGAAGATCACGGGAAGCAACAAGGAAAACCGTGTGACCACCGAAGCACCGGTAACGACTCCCGCACTTACACCCGAACAGCTGCAGCAGTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_611#0 GCAGAATCCCCCGAGGTTTAAAACGTGTGACACCGAAGCACGGTAACGACTCCCGCACTT 60
consensus_611#1 -------------------------------------------------CCGGGAGACGG 11
* **
consensus_611#0 ACACCCGAACAGCTGCAGCAGTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGCTGCTGCA 120
consensus_611#1 CCACCATCACA-CCGTCGCTAACGGAACCACTGACTGAGAACATTTTGGCCACTACGACG 70
**** *** * * ** ** * ** * * ** **** ** * *
consensus_611#0 CAGATTCCCTCGGTACTGACCTCCTCGAAGCCGGTGATTAAGCTAGAGACGGTGTACGAG 180
consensus_611#1 CACATTGACAAGGAGAGCAATTTGTTGGACTCGAGCATT--GCCACA--CTGCCTCCGAT 126
** *** * ** * * * * * ** *** ** * * * * * ***
consensus_611#0 TCGCACGTGCTGCCCATCATCAACGGTGCCAACACAATCCTCAGCACGATTTCGCTGCCC 240
consensus_611#1 TGTGCTGGGCCTTGACACGGAGACGCCACCACTTGAAACGCTAACGGAAACGTTCAGCAC 186
* * ** * *** *** ** * * * * * ** *
consensus_611#0 GATCGGTACGATCACCAAGACGAGCTACGAGCTTGTAAC----GACGACGCTGCCCATGC 296
consensus_611#1 TACCCAGGCCATGCTTAAGACGCACATTCTGCCTGTTATCCGAGAAGGCGATACTACCAG 246
* * * ** ****** * ** *** * ** * ** * *
consensus_611#0 CTACCCATCCCTGCCGATTCCGCAGCTCAATCCGCTT--CTACTGCAGCAGCAACAGCAG 354
consensus_611#1 CTACAC-CCTCATTCAAACCTACCATGTGACGCGTCTAGTCACTGCCACCAAAACGTTGC 305
**** * * * * * * * * ** * ***** * ***
consensus_611#0 CAACAGTCGCTCCAGATTCAGTCGACACCCGTCGTCACGCAGACAATCGTCACCGAGACG 414
consensus_611#1 CACCGATGGAGCTGTACCATTTCG-----TACCGTCGCGCACAC-----TGAACGAGTTC 355
** * * * * * *** **** **** ** * * ****
consensus_611#0 AACAGTAAGGTGCTGAANGCTGACGTTTGGTGCTAAGACGGCNGTATACCACGCTCTACT 474
consensus_611#1 AACAGCCGATTGGACGAGGC--AGGATCCGAGCTACACCTGGAG----CTGGAGTTTGGT 409
***** ** * ** * * * * **** * * * * * * *
consensus_611#0 CGACGACGGTGGTTCCAACTGGTGCTGACCACCTACTTGACCCAGTCGGTTTCCGTTCAA 534
consensus_611#1 -GATGACAACGAGAACGA-TGACGAGGATAAGC--CCAAGCGCGAACGGCTACCATCCGA 465
** *** * * * ** * ** * * * * * *** * ** * * *
consensus_611#0 CCGACTGGCAGCCGCTGCGTTCCCTGGATTCTTCCCCTAACCGTACGCACCGTTCCCGTT 594
consensus_611#1 TC---TGG--ACCTCT-CGAACATTGGGTCCGACTTTGACCTGTCCGAGGTGGACAAGAC 519
* *** ** ** ** * *** * * * * * ** ** * * *
consensus_611#0 CGTCGGCTAAG-GAGGAATGGAGCGAATTGACTTGCCTAGTNTGCTAATTTAGGATAACG 653
consensus_611#1 AAACATCCCGGAGAACATTCGACCGAAGAAGAAGATCACGGGAAGCAACAAGGAAAACCG 579
* * * ** * * ** **** * * ** * * * **
consensus_611#0 AATTGACAGAGCAA-AGAGATGGCGTGCACCTGAGAAGACGATCGTACAAGGGACAAACA 712
consensus_611#1 TGTGACCACCGAAGCACCGGTAACG-ACTCCCGCACTTACACCCGAACAGCTGC--AGCA 636
* ** * * * * * ** * ** * ** ** *** * * **
consensus_611#0 GCTAATGCCACAACGAACAGTGAACACATCCCGGGC 748
consensus_611#1 GTTGGCGCTGCTCCGTCTGCTCAACCCGGCCGC--- 669
* * ** * ** * *** * **
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||