cluster # 6110

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Anopheles gambiae
cluster # 6110 cluster # 6110 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6110#0 length = 697 sequences # 4

consensus_6110#1 length = 565 sequences # 1

consensusID : consensus_6110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 697
fasta sequence

                              [ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG-GGTGACTC-GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGCNACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAGCAAGTTCACGGTCGTCGAAT]

[+] EMBL BX466433             [ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG GGTGACTC GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGCNACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTA                                                 ]
[+] EMBL BM623288             [       ccgtACAAAGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAGGCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAG GGTGACTC GGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGCTCAGC ACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAGCAAGTTCACGGTCGTCGAAT]
[+] EMBL CNS099MX             [                                                 ACACGATAAAGGCACCCGATTTTTCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACTAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGATGTGTAAGGTCATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGTTCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGATGTGTTGACTCGGGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGTACTTTGTTAACGATTCG                                                                                                  ]
[+] EMBL CNS08WN8             [                                                                                                                                           TGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTTCATCGGTTCTACATGTTTCACTCATTCCGAACGTTCCCACGCTTCGTCACGGCCAGCTGCTGCTTGTTCCTAGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCGGTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATC                                                                                                                                                                                                                               ]




>consensus_6110#0
ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAG
GCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGA
ACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGG
GCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCA
CGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCT
TCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGT
GTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAGTTCCAGTCGTTCG
GTGATGATCCAAAGGAGGAAGTGATGACACTGGAGCGCATCCTGCTCCAAACGATCAAGT
TCGATCTGCAGGTAGAGCATCCGTACTCGTTCCTGGTAAAGTACGCCAAATGTCTGAAGG
GTGACTCGGCCAAGCTGCAGAAAATGGTCCAGATGGCGTGGAACTTTGTGAACGATTCGC
TCAGCNACGACCGTGTCGATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTAT
TTGGCCAGCAAGCTCAGCAAGTTCACGGTCGTCGAAT

consensusID : consensus_6110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTNNCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNGGCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTACTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCAGAAANTGGGTNCAGATGGCGTGGAAACTTTG]

[+] EMBL BX619928             [GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTNNCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNGGCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTACTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCAGAAANTGGGTNCAGATGGCGTGGAAACTTTG]




>consensus_6110#1
GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGAACACAC
CTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGGGCGCCC
GATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCACGGGTG
TTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCTTCGTCA
CGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGTGTAAGG
ACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTNNCGGTG
AATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNGGCCTCC
CAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTACTTCGT
TTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCAGAAANT
GGGTNCAGATGGCGTGGAAACTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6110#0      ATCGGCACAGGACATTGAGAGCGCATTCGTAAATAATTCTCTGCTAAATACACGAAAAAG 60
consensus_6110#1      ------------------------------------------------------------
                                                                                  

consensus_6110#0      GCACCCGATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGA 120
consensus_6110#1      ------GATTTTCCTCATTAACGATGCCAAATTGGTACTACGACAAAAAGGACCTACGGA 54
                            ******************************************************

consensus_6110#0      ACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGG 180
consensus_6110#1      ACACACCTTCGGCGAGGGATGGCGTCGATTACGAGACCGAACGGCGGTACCGCAGAGAGG 114
                      ************************************************************

consensus_6110#0      GCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCA 240
consensus_6110#1      GCGCCCGATTCATCATGGAAGCCGGCGCCTCGATGAGCTTAGGGCACAACACGGTGGCCA 174
                      ************************************************************

consensus_6110#0      CGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCT 300
consensus_6110#1      CGGGTGTTGTTTACTTCCATCGGTTCTACATGTTTCACTCGTTCCGAACGTTCCCACGCT 234
                      ************************************************************

consensus_6110#0      TCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGT 360
consensus_6110#1      TCGTCACGGCTAGCTGCTGCCTGTTCCTGGCCGGCAAGGTCGAGGAGACGCCAAAGAAGT 294
                      ************************************************************

consensus_6110#0      GTAAGGACATCATCAAAACAGCCCGCGGACTGCTGTCGGACGAGAAG--TTCCAGTCGTT 418
consensus_6110#1      GTAAGGACATCATCAAAACAGCCCNCGGACTGCTGTCNGACGAGAAAGTTCCCAGTCGTN 354
                      ************************ ************ ********   * ******** 

consensus_6110#0      CGG-----TGATGATCCAAAGGAGGAAGT--GATGA--CACTGGAGCGCATCCTGCTCCA 469
consensus_6110#1      NCGGTGAATGAANNCANAAGGANGGAAGTTGAATGAACNCCTGGGGAGCCGCCTTCCCNG 414
                        *     ***      ** *  ******   ****    **** * **  *** * *  

consensus_6110#0      AACGATCAAGTTCGATCTGCAGGTAG---------------------AGCATCCGTACT- 507
consensus_6110#1      GCCTCCCAAAACCGAANNCNNGGTTNCCGAATCCTGGCCGGGTTAGAAGCCTTCCCGTTA 474
                        *   ***   ***      ***                       *** * *    * 

consensus_6110#0      -----CGTTCCTGGT--AAAGTACGCC-AAATGTCTGAAGGGTGACTCGGCCAAGCTGCA 559
consensus_6110#1      CTTCGTTTNCCTNNTTAAAAGTACNCCCANATGTCTGAGGGGTGACTGGGCCAAGCTGCA 534
                             * ***  *  ******* ** * ******** ******** ************

consensus_6110#0      GAAAATGG-TCCAGATGGCGTGGAA-CTTTGTGAACGATTCGCTCAGCNACGACCGTGTC 617
consensus_6110#1      GAAANTGGGTNCAGATGGCGTGGAAACTTTG----------------------------- 565
                      **** *** * ************** *****                             

consensus_6110#0      GATCCAGTGGGAGCCGGAAATCATTGCCGTAGCACTGATCTATTTGGCCAGCAAGCTCAG 677
consensus_6110#1      ------------------------------------------------------------
                                                                                  

consensus_6110#0      CAAGTTCACGGTCGTCGAAT 697
consensus_6110#1      --------------------