These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1026 fasta sequence [GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC-GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA-TTGGGCGCATGACAGGGGGCGGC-GGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGC-ACTGGTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTATTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAAGGCAGCA] [+] EMBL BX626166 [GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA TTGGGCGCATGACAGGGGGCGGC GGGCTTCANGGCACGGTACAACAGTATCAGCGGCAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGC ACTGGTTGCTGCATCTCTG ] [+] EMBL BX623183 [ TATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTTGGGCGCATGACAGGGGGCGGCGGGGCTTCAGGGCACCGTACAACAGTATCAGCGGCAGCGG ] [-] EMBL BX466835 [ GACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAACCGCGTAACGCAATCGAATCAGCGGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA TTGGGCGCATGACAGGGGGCGGC GGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGG AACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTATTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAAGGCAGCA] consensusID : consensus_6119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTCCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGTGTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTATGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAATCATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACTATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACGCTACGTCTCG] [+] EMBL BM623283 [CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTCCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGTGTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTATGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAATCATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACTATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACGCTACGTCTCG] consensusID : consensus_6119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [AATCGCCCGAGGTNAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCC] [+] EMBL AL930206 [AATCGCCCGAGGTNAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6119#0 GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCA 60 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 CAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACT 120 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 AACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACT 180 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 TCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACT 240 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 ACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGT 300 consensus_6119#2 ---------------------------------------AATCGCCCGAGGTNAAATAGT 21 consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 ACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATG 360 consensus_6119#2 ACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATG 81 consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 TGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTT 420 consensus_6119#2 TGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTT 141 consensus_6119#1 ------------------------------------------------------------ consensus_6119#0 CGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCA 480 consensus_6119#2 CGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCA 201 consensus_6119#1 ---------CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTC------ 45 * * * * * ** * *** * ***** ** consensus_6119#0 GCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 540 consensus_6119#2 GCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 261 consensus_6119#1 -CGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 104 *********************************************************** consensus_6119#0 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCA 600 consensus_6119#2 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCA 321 consensus_6119#1 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCA 164 ************************************ ******** ************** consensus_6119#0 CCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGA 660 consensus_6119#2 CCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGA 381 consensus_6119#1 CCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGA 224 *************************** ******************************** consensus_6119#0 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 720 consensus_6119#2 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 441 consensus_6119#1 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 284 ************************************************************ consensus_6119#0 CAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 780 consensus_6119#2 CAGCGGAA-CCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 500 consensus_6119#1 CAGCGGAA-CCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 343 ******** *************************************************** consensus_6119#0 GGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGCA-CTG 839 consensus_6119#2 GCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTG 560 consensus_6119#1 GCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTG 403 * ******** ************************************* ** **** *** consensus_6119#0 GTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGT 899 consensus_6119#2 TTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGT 620 consensus_6119#1 TTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGT 463 ************************ * *************************** **** consensus_6119#0 GTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTA 959 consensus_6119#2 GTCCCC------------------------------------------------------ 626 consensus_6119#1 GTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTA 523 ****** consensus_6119#0 TTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAA 1019 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 TGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAAT 583 consensus_6119#0 GGCAGCA----------------------------------------------------- 1026 consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 CATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACT 643 consensus_6119#0 ------------------------------------------------------------ consensus_6119#2 ------------------------------------------------------------ consensus_6119#1 ATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACG 703 consensus_6119#0 ---------- consensus_6119#2 ---------- consensus_6119#1 CTACGTCTCG 713 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||