These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence [CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAG--AGAGGACGCATTCAAGACGCATGGTTAGCAAATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAAT-AAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCAT-AAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGAAAGGGAAGAGATGTCATCATCCCATCATCCTCCCTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAGGNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANNTTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNATGNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC] [+] EMBL BM643882 [CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAG AGAGGACGCATTCAAGACGCATGGTTAGCAAATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAAT AAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCAT AAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGAAAGGGAAGAGATGTCAT ] [+] EMBL CF541931 [ GAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACA GTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTACACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGGAGAAATAAAAAAAACAACCCGCACATAGAGCAAGAAAAAGAGCC AGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGAGTATGTAAATGCACGGAGCATAAAAAAGGGTGCAAAACGCTCTCAAAACCAGCAAACACAAAAGCAAATCATGTTAATGGAAAGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAA GGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGANAGGGAAGAGATGCCATCATCCCATCATCCTCCCTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAGGNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANNTTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNATGNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC] consensusID : consensus_6122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACACTACAGCATAAAAGCTGCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAAAAAAGAACTGTTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCACCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAAATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGGTAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCACTGAGTNAGGTAGAGACTCTGTAAATCGGAAATTTGNATAAAGTAATAAACCGAAACACCTGCTACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGACGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTAGCCNAAAAACTGCCANGCGTTATATTGCCCGCTGCGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCGGTCTGGTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCNANCGCANCTGCGTCTTCCAAACATCCAAGTCAA] [+] EMBL AL931622 [GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACACTACAGCATAAAAGCTGCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAAAAAAGAACTGTTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCACCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAAATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGGTAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCACTGAGTNAGGTAGAGACTCTGTAAATCGGAAATTTGNATAAAGTAATAAACCGAAACACCTGCTACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGACGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTAGCCNAAAAACTGCCANGCGTTATATTGCCCGCTGCGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCGGTCTGGTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCNANCGCANCTGCGTCTTCCAAACATCCAAGTCAA] consensusID : consensus_6122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [GGGGCATAACAACTACAGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATCGCTGCAGCTGCAGATGGTAGGGAGAGAAAAG] [+] EMBL BX626853 [GGGGCATAACAACTACAGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATCGCTGCAGCTG ] [+] EMBL BX616205 [ GAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCTGCAGATGGTAGGGAGAGAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6122#0 CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCT 60 consensus_6122#2 --------------------------------GGGGCATAACAACTACAGCATAAAAGCT 28 consensus_6122#1 ----GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACA-CTACAGCATAAAAGCT 55 *** * *** **** *********** consensus_6122#0 GCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAA--AATGCAGCAAAAAAATAA 118 consensus_6122#2 GCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAA--AATGCAGCAAAAAAATAA 86 consensus_6122#1 GCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAA 115 **** * * ************************ ** ***** * * ***** consensus_6122#0 AAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCA 178 consensus_6122#2 AAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCA 146 consensus_6122#1 AAAAGAACTG-TTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCA 174 ********** ******************** **** ************* * ******* consensus_6122#0 CCAGTGGAGAGAAGCTAAGAGAGAGAGA--GAGGACGCATTCAAGACGCATGGTTAGCAA 236 consensus_6122#2 CCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAA 206 consensus_6122#1 CCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAA 234 ******************** *** *** ************* ************* ** consensus_6122#0 ATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCA-TGCCA-TGTG--TGCTCTGGTTGG 292 consensus_6122#2 ATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCA-TGCCA-TGTG--TGCTCTGGTTGG 262 consensus_6122#1 ATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGG 294 ************* ** ************ * *** ***** *** ************ consensus_6122#0 CAA---GCTTTGGTTTCCACTCA--TTTTCCCAAG-CAAGCCATGATGAGTAAACAGCAA 346 consensus_6122#2 CAA---GCTTTGGTTTCCACTCA--TTTTCCCAAG-CAAGCCATGATGAGTAAACAGCAA 316 consensus_6122#1 TAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCAC--TGAGTNA-----GG 347 ** * ************** * ******** * ***** ***** * consensus_6122#0 AGGAAATTGAAGAAATAAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGA 406 consensus_6122#2 AGGAAATTGAAGAAATAA-AAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGA 375 consensus_6122#1 TAGAGACTCTGTAAATCGGAAATT------TGNATAAAGTAATAAACCGAAACACCTGCT 401 ** * * **** *** *** ** ** *** ** ** consensus_6122#0 GAGAGA------------GAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTAT-A 453 consensus_6122#2 GAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTAT-A 434 consensus_6122#1 ACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGA 461 * * * ** ** ** **** *** ** * * consensus_6122#0 TGCAGTGCAGATA-ACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAA 512 consensus_6122#2 TGCAGTGCAGATA-ACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAA 493 consensus_6122#1 CGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTA---GCCNAAAAACTGC 518 * ** * ** **** ** * * * ** ** ** ** ** * consensus_6122#0 AAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATG 572 consensus_6122#2 AAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATG 553 consensus_6122#1 CANGCGT-TATATTGCCCGCTG--CGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCG 575 * * ** * * ** * * * * ** ** * * * * * ** * consensus_6122#0 GGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATC 632 consensus_6122#2 GGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATC 613 consensus_6122#1 GTCTG--GTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCN 633 * ** ** * ** *** *** * ** * * ** * * consensus_6122#0 GCTGCAGCG--AGATGGTAGGGAGAGAAAGGGAAGAGATGTCATCATCCCATCATCCTCC 690 consensus_6122#2 GCTGCAGCTGCAGATGGTAGGGAGAGAAAAG----------------------------- 644 consensus_6122#1 ANCGCANCTGCGTCTTCCAAACATCCAAGTCAA--------------------------- 666 *** * * * * ** consensus_6122#0 CTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAG 750 consensus_6122#2 ------------------------------------------------------------ consensus_6122#1 ------------------------------------------------------------ consensus_6122#0 GNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANN 810 consensus_6122#2 ------------------------------------------------------------ consensus_6122#1 ------------------------------------------------------------ consensus_6122#0 TTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNAT 870 consensus_6122#2 ------------------------------------------------------------ consensus_6122#1 ------------------------------------------------------------ consensus_6122#0 GNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC 909 consensus_6122#2 --------------------------------------- consensus_6122#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||