cluster # 6124

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Anopheles gambiae
cluster # 6124 cluster # 6124 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6124#0 length = 1007 sequences # 4

consensus_6124#1 length = 579 sequences # 1

consensusID : consensus_6124#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1007
fasta sequence

                              [CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCTCGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCCTCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATGTACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGGGGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATGCGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTGTTT-T----TTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT--A---A--GCCCTCCCCCTGTCGGGTGGATGAGT-GGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGA--AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGTGATAGTGGTACCGCAA]

[+] EMBL BM618947             [CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCTCGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCCTCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATGTACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGGGGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATGCGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTT TTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM590463             [                                                                                                                                                                                                                                                                                                                                                ccgAACCAGTGGTCCTCCGTCAGTGGTTTCAGCACGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGTAGCGGTGGAGACGCAGCACCCGGACACCCGACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTGTTTCT    TTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACT  A   A  GCCCGCTCCCTGTGTGGTGGATGAGT GGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGAGTCCGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCACAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGGCGGCGTACATTGC                                                                                              ]
[+] EMBL BM590941             [                                                                                                                                                                                                                                                                                                                                                                     ccgGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGGCGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTG TT T    TTTTGTTTTGTGTGCTGCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCCCTGTCGGGTGGATGAGT GGTGAAGTGG TCGGTGAATGTTCGTCCGAGAAGGTGA  AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGT                ]
[+] EMBL BM617319             [                                                                                                                                                                                                                                                                                                                                                                            ccgGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTTTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGGCGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCTTCAAATTGTAACGCGTG TT T    TTTTGTTTTGTGTGCTGCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCCCTGTCGGGTGGATGAGTGGGTGAAGTGGTTCGGTGAATGTTCGTCCGAGAAGGTGA  AGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCACCTTAAAACCGAAGGTGTCCGAAGTTGCCGTTGATAGTGGTACCGCAA]




>consensus_6124#0
CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCT
CGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCC
TCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATG
TACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGG
GGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATG
CGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGT
GGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCA
CATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTG
TTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCT
TCAAATTGTAACGCGTGTTTTTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGC
TAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCT
AACTAAGCCCTCCCCCTGTCGGGTGGATGAGTGGTGAAGTGGTTCGGTGAATGTTCGTCC
GAGAAGGTGAAGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGCAAAGAAAGGTG
TTGAGTTTAGTGCGCACTGGAACGCATTTCTGGAAGATCCTGCCACTACTAGGCAACGCT
TCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCACAGTGTGTTCGCGAGT
CGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAACGCGAACGCGTACCAC
CTTAGAACCGAAGGTGTCCGAAGTTGCCGGTGATAGTGGTACCGCAA

consensusID : consensus_6124#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CCGCCCACGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGGTGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT]

[+] EMBL BM619920             [CCGCCCACGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGGTGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCACTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT]




>consensus_6124#1
CCGCCCACGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGTGGTTTCAGCGCGGTCGACC
GTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCACATCTGACAGTTTCGCGCA
GCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTGTTGCGCTCGCTGGTGAAGG
AAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCTTCAAATTGTAACGCGTGTT
TTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGTTTGCTAGTGAGTAGTTGCC
GTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAACTTCTAACTCGACTCACGGC
CCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGGTGAATGTTCGTCCGATAAG
GTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAAGAAAAGAAAGGTGTTGAGT
TTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCACTACTAGGCAACGCTTCCA
CGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6124#0      CCGGGTGCTGGTGCGAAGAGACGCCTGACTGGCCGGGCTAAAAATAATGCCCCACATGCT 60
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      CGTGATTGCACGCGTGCCGGGTGATTCTTTCACTAGTGACCATGCGGACGTCATTGTCCC 120
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      TCTAGAGCACAGTTGACGCCCACTGGCGCACGCTATTTACGTACGGTCGACGCGCCTATG 180
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      TACGCAGCAGCTGGCTGCGCCACCAGTACGGGGGTACGTACAATTACACTCATTGCATGG 240
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      GGTAGCAGCATGATGTTCGAAGGGGGTTGACTCGAAAGTAACATACATACCATTTCAATG 300
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      CGCACCGCGACCATTACCCAGTGCAGTGCGCGAGCGAGAAACCAGTGGTCCTCCGTCAGT 360
consensus_6124#1      ------------------CCGCCCA-CGCGTCCGCGAGAAACCAGTGGTCCTCCGTCAGT 41
                                        * *  **  ***   ***************************

consensus_6124#0      GGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCA 420
consensus_6124#1      GGTTTCAGCGCGGTCGACCGTGTTCGCGTGTGTGCTCCGGGCCAGCAGCAGTGTAACGCA 101
                      ************************************************************

consensus_6124#0      CATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTG 480
consensus_6124#1      CATCTGACAGTTTCGCGCAGCGGTGGAGACGCAGCACCCGGACACCCAACCCCAAGCGTG 161
                      ************************************************************

consensus_6124#0      TTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGACTGCCT 540
consensus_6124#1      TTGCGCTCGCTGGTGAAGGAAGCATCTTCTTTGCAAATATAAATATTTGCCCGGCTGCCT 221
                      ***************************************************** ******

consensus_6124#0      TCAAATTGTAACGCGTGTTTTTTT----TGTTTTGTGTGCTTCTCCATGTGTGTGACTGT 596
consensus_6124#1      TCAAATTGTAACGCGTGTTTTTTTGTTTTGTTTTGTGTGCTTCTCCATGTGTGTGACTGT 281
                      ************************    ********************************

consensus_6124#0      TTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAAC 656
consensus_6124#1      TTGCTAGTGAGTAGTTGCCGTGTTAGAAGCATCCAGGAAGGAAGTGTGCACGGGCCTAAC 341
                      ************************************************************

consensus_6124#0      TTCTAACTAA-------GCCCTCCCCCTGTCGGGTGGATGAGTGG-TGAAGT-GGTTCGG 707
consensus_6124#1      TTCTAACTCGACTCACGGCCCTCCCTCTGTGTGGTGGAGAAGTGGGTGAAATTGGTTCGG 401
                      ********         ******** ****  ******  ***** **** * *******

consensus_6124#0      TGAATGTTCGTCCGAGAAGGTGAAGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAA 767
consensus_6124#1      TGAATGTTCGTCCGATAAGGTGAGGGTGTGAATTTATCCGTTCTGTGCTTGCTGTGGAAA 461
                      *************** ******* ************************************

consensus_6124#0      GCAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTCT--GGAAGATCCTGCCA 825
consensus_6124#1      GAAAAGAAAGGTGTTGAGTTTAGTGCGCACTGGAACGCATTTTCTGGGAAGATCCTGCCA 521
                      * ****************************************    **************

consensus_6124#0      CTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGTTCAC 885
consensus_6124#1      CTACTAGGCAACGCTTCCACGGCTCAAGGTTTTACAGCACGGGCCGATCATAGTGGTT-- 579
                      ******************************************************* *   

consensus_6124#0      AGTGTGTTCGCGAGTCGGCGTACATTGCCGATTCGGCACGGGAAGAAGTGTTTGTATAAC 945
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      GCGAACGCGTACCACCTTAGAACCGAAGGTGTCCGAAGTTGCCGGTGATAGTGGTACCGC 1005
consensus_6124#1      ------------------------------------------------------------
                                                                                  

consensus_6124#0      AA 1007
consensus_6124#1      --