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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1259 fasta sequence
[ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC]
[+] EMBL BX629278 [ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA ]
[+] EMBL BX629171 [ GTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTCCGCATTTAGTCTGCCCGTTTTGGTGTGGTGAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACGACACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTGCATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACA ]
[+] EMBL BM584019 [ cCGAGCGAACGGGCGTTCCAGGACCATGCGACCGAGTTCCGCACACGGCACGCATTTCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACAAGGTGTCTTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCAGATGTTCTCGCCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTCGCCTGCATTGCGCTGTGCGAGTACGTGGACAATCCAAATTACGTGAAGAGTCAAGAAGAAACACAACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACCATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTTAGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGAAACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGATCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCGCTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCTGCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCTGC]
consensusID : consensus_6126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence
[GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA]
[+] EMBL AL934598 [GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATCGAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAAAGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCAGGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAGGCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGTCCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACCAACTCGAGCGAACGGACCTTCCAGGACCATGCGACGAGTTCCGCACACGGACACGCATTTCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCTGAACCAAGTGTCGTGTTCGGGAGGGCCATCTATCTGTCGGCGGAA]
[+] EMBL BM606182 [ TACACTAAACACCATACCCCGCATCCAGATGGAACCGGCTCCATTGTCCCTCTAAGACAAACGGGTGCTGGTGCTGAAAACGATCATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCGTTCCGGTACGATTCCTGCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6126#0 ATTACCCGTACGTGTTCTATGTTTGCTGAACGAACGAATCAGTGCATTTTCCGCTCCGTC 60
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 CGCATTTAGTCTGCCCGTTTTGGTGTGGTG--AAATACACAAAACACCATACCCCGCATC 118
consensus_6126#1 ----------------GAATCGGCACGAGGGTAAATACACAAAACACCATACCCCGCATC 44
* * ** * * ****************************
consensus_6126#0 GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 178
consensus_6126#1 GAGATGGAACCGGCTCCATTGTCCCTCGAAGCCAAACGGTTGCTGGTGCTGAAAACGATC 104
************************************************************
consensus_6126#0 ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 238
consensus_6126#1 ATCCACGACCCGGCAGCGACCGATCTGCGGCTGTCGCTGTTCATTTCCGCGGCCAAATCG 164
************************************************************
consensus_6126#0 TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 298
consensus_6126#1 TTCCGGTACGATTCCTGCCTACAGCCCTTTCCGCCGGACTTCATCACAAACAATGAGAAA 224
************************************************************
consensus_6126#0 AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 358
consensus_6126#1 AGCATCGACCAGTTGTGTCGGGTACTGGAGACGATTCCACCGGTTGCCGATCTTCCGGCA 284
************************************************************
consensus_6126#0 GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 418
consensus_6126#1 GGGCTTGCCGCGCTCGACGAGCAGACGGTGGGACTGTTGCACTGGATCCTCTGTCGACAG 344
************************************************************
consensus_6126#0 GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 478
consensus_6126#1 GCCCGTCCGGCGCTGCGAACCGTCCCGAAAGCCCAGCACGATGAGGTGCTCGCCAAATGT 404
************************************************************
consensus_6126#0 CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 538
consensus_6126#1 CCGTGCTACGCCAAATACGCTCAACCGAGCCACATCTTCGAGGTGGTGTACCGTGAAACC 464
************************************************************
consensus_6126#0 AACTCGAGCGAACGGACCTTCCAGGACCATGCGACCGAGTTCCGCACACG-ACACGCATT 597
consensus_6126#1 AACTCGAGCGAACGGACCTTCCAGGACCATGCGAC-GAGTTCCGCACACGGACACGCATT 523
*********************************** ************** *********
consensus_6126#0 TCACGGCAGTCGGCTGTTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 657
consensus_6126#1 TCACGGCAGTCGGCTGGTTAACTTCCACTCCATCCTGCACTACGGGCTGCAGCAGCACCT 583
**************** *******************************************
consensus_6126#0 GAACAAGGTGTCGTTGTTCGGGGAGGGCATCTATCTGTCGGCGGAACTGCAGGTGAGCCA 717
consensus_6126#1 GAACCAAGTGTCGT-GTTCGGGAGGGCCATCTATCTGTCGGCGGAA-------------- 628
**** * ******* ******* ** *******************
consensus_6126#0 GATGTTCTCACCGAACGGGTCGGGCTGGTCGAGGTCGACGCTCGGCACACATCTGGCCTG 777
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 CATTGCGCTGTGCGAGTACGTGGACNATCCAAATTACGTGAAGAGTCAAGAAGAAACACA 837
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 ACAGTTGCCGGGAACGGGTGAAGGAACGACAGCGCACGCCACACCCTCCTCCGATGGACC 897
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 ATCCGCAATCATGAGCACATCGTTTACCGGCAATGGAAGCTTCCCGGAGCGTTACATTTT 957
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 AGTGAAAAACAACGAACTGGTGCAGGTGCGCTATCTGCTTCTGTACGGAACCACCAAAGA 1017
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 AACGAACAACAATAACAACAACACTGCCACAACCGCCGGACCGCACGGATCGACCGTCGA 1077
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 TCCACTGTACGCCCTGCCGGTCAGACCACCGTCGTACCAGATGCGTCACCCACCGAGCCG 1137
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 CTTCATCCAGTGGATTGCCAACAATAAGGGGTTCGTGCTGATCGGCGGGTACGTGGGGCT 1197
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 GCTCCTGATCGTTGGCTTCATCAACAGCCGCAATGCGCACTTCGTGAAGGAGATGCTCCT 1257
consensus_6126#1 ------------------------------------------------------------
consensus_6126#0 GC 1259
consensus_6126#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||