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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1073 fasta sequence
[TGGAAATGCACATGCGAAACGAAAATCCGCCACTGTGTGGGCGCGACCATCTGAGCTACCGCAGCTACTACTACCCGGTGAAGAACGTGATGGACGGGGATCTGTGCGAACAGTTTACCTCGCTCGATCCGGCCAAGCAGAAAAGCATCGCCTCGGACCTGGGCCGCACGCCCAGCGAGGTGGCGAAGAAGCTGGAGGATATTCGCACACGGTACGCGTTCTAGACCAGCGCAGGGAAAGGGATCGGAGTGGGGCTTCACTGCCACACTTCCGTTTTTGTTCCTCAATTTTCTGTGTTGGCGTGCGATGGTGCAGATTTCTCTATTAAGATCATTCCGGATCGTTTGGCGAGCGTATTTATCTCTAGAAAACTAAGATGTGAAAGTGCTTCATTTCTCAACTATATTCGCCATAACGTGTGCGGTTCTGCAGTATTGTTCCCATCAACATGGCGTTTTTTTGTATAAACCGACTGATCCAATTTTACATTAAGTGCTCCCTATATCGATCCGATCCGTTGCTGTCCGCGGTGGTGGTTGGAGCGTCATGTAAACATCACCCCATCTTAACTGCTCTCATGGTTTACACTTATCCTCGATGCAAACCGGTTCTCTCATGCTCTGTACGAAAAGTGCATGTACAACATGAGTCGTGAATCAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAAAACTTTCCCTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCTACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGTATTGCATGACGATCTTCTAACATCGTCCCTCCTAGATGAAGCGACCAATTTGAGATACATCTTTCCCTCGCCTCGAATGGCAAGAGATCTTGGTTACCTTCCAACAACATCCAGCCAAATTGGTCAGTCAGCAATAGAAGCCTGTGAGCCTAACAAATATAGATGGAGTTCAATGTAGTTTTTATCTGTAAACCAATAAATAAATATAAATAACTTTGCACTACATGCGTGATATAATGCCGTGGTGTGACATATT]
[+] EMBL BX604428 [TGGAAATGCACATGCGAAACGAAAATCCGCCACTGTGTGGGCGCGACCATCTGAGCTACCGCAGCTACTACTACCCGGTGAAGAACGTGATGGACGGGGATCTGTGCGAACAGTTTACCTCGCTCGATCCGGCCAAGCAGAAAAGCATCGCCTCGGACCTGGGCCGCACGCCCAGCGAGGTGGCGAAGAAGCTGGAGGATATTCGCACACGGTACGCGTTCTAGACCAGCGCAGGGAAAGGGATCGGAGTGGGGCTTCACTGCCACACTTCCGTTTTTGTTCCTCAATTTTCTGTGTTGGCGTGCGATGGTGCAGATTTCTCTATTAAGATCATTCCGGATCGTTTGGCGAGCGTATTTATCTCTAGAAAACTAAGATGTGAAAGTGCTTCATTTCTCAACTATATTCGCCATAACGTGTGCGGTTCTGCAGTATTGTTCCCATCAACATGGCGTTTTTTTGTATAAACCGACTGATCCAATTTTACATTAAGTGCTCCCTATATCGATCCGATCCGTTGCTGTCCGCGGTGGTGGTTGGAGCGTCATGTAAACATCACCCCATCTTAACTGCTCTCATGGTTTACACTTATCCTCGATGCAAACCGGTTCTCTCATGCTCTGTACGAAAAGTGCATGTACAACATG ]
[+] EMBL BM654607 [ ccgGACTGATCCAATTTTACATTAAGTGCTCCCTATATCTATCCGATCCGTTGCTGTCTGCGGTGGTGGTTGGAGCGTCATGTAAACATCACCCCATCTTAACTGCGCTCATGGTTTACACTTATCCTCGATGCAAACCGGTTCTCTCATGCTCTGTACGAAAAGTGCATGTACAACATGAGTCGTGAATAAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAATACTTTCCCTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCTACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGTATTGCATGACGATCTTCTAACATCGTCCCTCCTAGATGAAGCGACCAATTTGAGATACATCTTTCCCTCGCCTCGAATGGCAAGAGATCTTGGTTACCTTCCAACAACATCCAGCCAAATTGGTCAGTCAGCAATAGAAGCCTGTGAGCCTAACAAATATAGATGGAGTTCAATGTAGTTTTTATCTGTAAACCAATAAATAAATATAA ]
[+] EMBL BM606956 [ ccgTGGAGCGTCATGTAAACATCACCCCATCTTAACTGCTCTCATGGTTTACACTTATCCTCGATGCAAACCGGTTCTCTCATGCTCTGTACGAAAAGTGCATGTACAACATGAGTCGTGAATCAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAAAACTTTCCCTGAGCAACGCATAAGTAACAGACGTAAAACATCAACTTTCAATAGAACCAGAATCTTCTACAATTTGAGGCACACAATTTTCTTCTTTTAATCAATTAATGTATTGCATGATGATCTTCTAACATCGTCTCTCCTAGATGAAGCGACCAATTTGAGATACACCTTTCCCTCCCCTCGAATGGCAAGAGATCTTGGTTACCTTCCAACAACATCCAGCCAAATTGGTCAGCCAGCAATCGAAGCCTGTGAGACAAACAAATCTAGATGGAGTTCAATGTAGTTTTTATCTGTAAACCAATAAATAAATATAAATAACTTTGCACTACATGCGTGATATAATGCCGTGGTGTGACATATT]
[+] EMBL BX614506 [ AAGTGCAGGTACAACATGAGTCGGGAATCAATAAGGCTGCGCAGCAGCACAGGAGTCCTTCTGAAGAATGGACGCAAAACTGTCCCGGAGCAACGCATAAGTAACAGACGTA ]
consensusID : consensus_6129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCGGGCTAACTGAAAGGGGTTAAATTTGTGAGAAAAATCCACATTTGCTATGAATTTCTCTTCGTAAGATTCCGGTTGTTTCATGGGTTGACATTTATATGTATTTCAACTGTGAATCACTCCAGTTAGCGAACAGTTAGCGAAAAAAAAACTCCAGTAAAACACGTCCAGAGTTAGCGGTCACCTACTGTACTAAGCTTTCACCTAATCCCCAACATAATGATGATTCAGATGAAATTATGACCTTTGGACACCTCAAAGAATAAATCTTTGGTTACCTCATAAAATCGTACTGACCACAAAATAAACATATTCCGAACTAATTGTGTTTTTTTCGCATTATAGTCTCATGATGTTATTTTTATCTCTTTCTGTAGTGCATGTACAACATGAGTCGTGAATAAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAATACTTTCCCTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCTACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGGTAAGT]
[+] EMBL BM584572 [CCGGGCTAACTGAAAGGGGTTAAATTTGTGAGAAAAATCCACATTTGCTATGAATTTCTCTTCGTAAGATTCCGGTTGTTTCATGGGTTGACATTTATATGTATTTCAACTGTGAATCACTCCAGTTAGCGAACAGTTAGCGAAAAAAAAACTCCAGTAAAACACGTCCAGAGTTAGCGGTCACCTACTGTACTAAGCTTTCACCTAATCCCCAACATAATGATGATTCAGATGAAATTATGACCTTTGGACACCTCAAAGAATAAATCTTTGGTTACCTCATAAAATCGTACTGACCACAAAATAAACATATTCCGAACTAATTGTGTTTTTTTCGCATTATAGTCTCATGATGTTATTTTTATCTCTTTCTGTAGTGCATGTACAACATGAGTCGTGAATAAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAATACTTTCCCTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCTACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGGTAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6129#0 TGGAAATGCACATGCGAAACGAAAATCCGCCACTGTGTGGGCGCGACCATCTGAGCTACC 60
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 GCAGCTACTACTACCCGGTGAAGAACGTGATGGACGGGGATCTGTGCGAACAGTTTACCT 120
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 CGCTCGATCCGGCCAAGCAGAAAAGCATCGCCTCGGACCTGGGCCGCACGCCCAGCGAGG 180
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 TGGCGAAGAAGCTGGAGGATATTCGCACACGGTACGCGTTCTAGACCAGCGCAGGGAAAG 240
consensus_6129#1 ----------------------------------------CCGGGCTAAC----TGAAAG 16
* * * * * *****
consensus_6129#0 GGATCGGAGTGGGGCTTCACTGCCACACTTCC-----GTTTTTGTTCCTCAATTTTCTGT 295
consensus_6129#1 GGGTTAAATTTGTGAGAAAAATCCACATTTGCTATGAATTTCTCTTCGTAAGATTCCGGT 76
** * * * * * * ***** ** * *** * *** * * ** * **
consensus_6129#0 GTTGGCGTGCGATGGTGCAGATTTCTCTATTAAGATCATTCCGGATCGTTTGGCGAGCGT 355
consensus_6129#1 TGTTTCATGGGTTGACATTTATATGTATTTCAACTGTGAATCACTCCAGTTAGCGAACA- 135
* * ** * ** ** * * * * ** * * ** **** *
consensus_6129#0 ATTTATCTCTAGAAAACTAAGATGTGAAAGTGCTTCATTTCTCAACTATATTCGCCATAA 415
consensus_6129#1 GTTAGCGAAAAAAAAACTCCAGT---AAAACACGTC------CAGAGTTAGCGGTCACCT 186
** * ****** * *** * ** ** ** * **
consensus_6129#0 CGTGTGCGGTTCTGCAGTATTGTTCCCATCAACATGGCGTTTTTTTGTATAAACCGACTG 475
consensus_6129#1 ACTGTACTAAGCTTTCACCTAATCCCCA---ACATAATGATGATTCAGATGAAATTA-TG 242
*** * ** * * **** **** * * ** ** ** * **
consensus_6129#0 ATCCAATTTTACATTAAGTGCTCCCTATATCGATCCGATCCGTTGCTGTCCGCGGTGGTG 535
consensus_6129#1 ACCT--TTGGACAC------CTCAAAGAATAAATCT--TTGGTTACCTCATAAAATCGTA 292
* * ** *** *** ** *** * *** * * **
consensus_6129#0 GTTGGAGCGTCATGTAAACATCACCCCATCTTAACTGCTCTCATGGTTTACACT-TATCC 594
consensus_6129#1 CT--GACCACAAAATAAACAT-ATTCCGAACTAATTGTGTTTTT--TTCGCATTATAGTC 347
* ** * * ******* * ** *** ** * * ** ** * ** *
consensus_6129#0 TCGATGCAAACCGGTTCTCTCATGCTCTGTACGAAAAGTGCATGTACAACATGAGTCGTG 654
consensus_6129#1 TC-ATG-ATGTTATTTTTATCTCTTTCTGTA------GTGCATGTACAACATGAGTCGTG 399
** *** * ** * ** ****** ***********************
consensus_6129#0 AATCAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAAAACTTTCC 714
consensus_6129#1 AATAAATAAGGCTGCGCAGCTGCACAGGAGTCCTTCTGAAGATTGGACGCAATACTTTCC 459
*** ************************************************ *******
consensus_6129#0 CTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCT 774
consensus_6129#1 CTGAGCAACGCATAAGTAACAGACGTAAAACAACATCTTACAATAGAACCAGAATCTTCT 519
************************************************************
consensus_6129#0 ACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGTATTGCATGACGATCTTC 834
consensus_6129#1 ACAATTTGAGGCACACAATTTTCTTCTCTTAATCAATTAATGGTAAGT------------ 567
****************************************** *
consensus_6129#0 TAACATCGTCCCTCCTAGATGAAGCGACCAATTTGAGATACATCTTTCCCTCGCCTCGAA 894
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 TGGCAAGAGATCTTGGTTACCTTCCAACAACATCCAGCCAAATTGGTCAGTCAGCAATAG 954
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 AAGCCTGTGAGCCTAACAAATATAGATGGAGTTCAATGTAGTTTTTATCTGTAAACCAAT 1014
consensus_6129#1 ------------------------------------------------------------
consensus_6129#0 AAATAAATATAAATAACTTTGCACTACATGCGTGATATAATGCCGTGGTGTGACATATT 1073
consensus_6129#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||