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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1130 fasta sequence
[GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATCTTTTTATCTTTATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCTNGTTGACTTTATTGTGTTAGTACAGATGTTTTTTTTTCTCTTCTTTATTGTGAGTACATATCGCAGGACGAAGAATGTGGTGTGATGTAAGGGGAAGGCCGATATTTAATTGTAATTATAATTTAATATGCTTTTCTATTATTATTACCTAGTCAGTTTGTTGCTGTAAAGACACGTGAACCACGTGCCACGCTGTGTCACGTTGTCTTTAACAATCAGAGCAGAGCAGTGCAATCTAGCAACCAAAGCAAAAATGCCAAGGAAACGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGCACCAACTGATTACGAAATAGAGATCCAACAGGA]
[+] EMBL BX467347 [GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATT ]
[+] EMBL BX623510 [ AGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGA TTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGT ]
[+] EMBL BX626340 [ TTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGNACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAA AAACAAGATAAGTGCAATCAATTG TTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATCTTTTTATCTTTATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCTNGTTGACTTTATTGTGTTAGTACAGATGTTTTTTTTTCTCTTCTTTATTGTGAGTACATATCGCAGGACGAAGAATGTGGTGTGATGTAAGGGGAAGGCCGATATTTAATTGTAATTATAATTTAATATGCTTTTCTATTATTATTACCTAGTCAGTTTGTTGCTGTAAAGACACGTGAACCACGTGCCACGCTGTGTCACGTTGTCTTTAACAATCAGAGCAGAGCAGTGCAATCTAGCAACCAAAGCAAAAATGCCAAGGAAACGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGCACCAACTGATTACGAAATAGAGATCCAACAGGA]
consensusID : consensus_6132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence
[TCGCCCGAGGNTCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAAAAACAAGATAAGTGCAATCAATGTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATCTTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTCGTATGTCATTGTTCGCTANGCTTATTGACTATGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATACCCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGGCCCGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAAAGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTACAAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAACCCAGCGCACCAAAGCGCGCGGTGGCGCAANNACAAANCCAGACAGCGCACAAGCNCGCAAACAACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA]
[+] EMBL AL930153 [TCGCCCGAGGNTCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAAAAACAAGATAAGTGCAATCAATGTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATCTTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTCGTATGTCATTGTTCGCTANGCTTATTGACTATGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATACCCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGGCCCGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAAAGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTACAAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAACCCAGCGCACCAAAGCGCGCGGTGGCGCAANNACAAANCCAGACAGCGCACAAGCNCGCAAACAACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA]
consensusID : consensus_6132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CCGAAAAACATCTAATCGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGTGTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGAGAATACACTGTCCTCAAAGGACGGATAGCTGAAAAAGGGACAGATCTATGTGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTGTAATCATTCTAGTTTCCAAACGTACTGTAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGT]
[+] EMBL BM623607 [CCGAAAAACATCTAATCGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGTGTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGAGAATACACTGTCCTCAAAGGACGGATAGCTGAAAAAGGGACAGATCTATGTGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTGTAATCATTCTAGTTTCCAAACGTACTGTAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6132#0 GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTA 60
consensus_6132#1 ------------------------------------------------------------
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 TTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACG 120
consensus_6132#1 ------------------------------------------------------------
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 TTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTT 180
consensus_6132#1 ---------------------------------------TCGCC--CGAGGNTCTACTTT 19
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 GTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAA 240
consensus_6132#1 GTTGCTATTGCTAGCTTCTATCCCAACGATTTT-CCTACACCTTCTTCACGCGGAACTAA 78
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 TTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGT 300
consensus_6132#1 TTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGT 138
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 ACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAAC 360
consensus_6132#1 ACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAAC 198
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 GCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAG 420
consensus_6132#1 GCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAG 258
consensus_6132#2 --CCGAAAAA-----CATCTAAT-CGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGT 52
* ** * * *** * ** * * * ** ***** ** **
consensus_6132#0 TTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGAC 480
consensus_6132#1 TTACTGTTACGGTT-GTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGAC 317
consensus_6132#2 GTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGA---GAATACACTGTCC 109
* ***** * * * * * * * *** * * * ** * *
consensus_6132#0 TTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTA 540
consensus_6132#1 TTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTA 377
consensus_6132#2 TCAAAG--GACGGATAGCTGAAAAAGG------GACAGATCTATG-TGTTGTTATAGGAG 160
* * * * * ** ** * *** * **** *** ***
consensus_6132#0 TCCAC-TACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATA-TGAACGCG 598
consensus_6132#1 TCCAC-TACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATA-TGAACGCG 435
consensus_6132#2 AGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAA-AGTGTCATATGCTTAAACTG 219
** ** ** * ** ** *** **** * **** ** ** * ** *
consensus_6132#0 AAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGG 658
consensus_6132#1 AAACAAAATACCAA-AAACAAGATAAGTGCAATCAAT--GTTTGCAGGAACGAGTATAGG 492
consensus_6132#2 CGACACGATGGATGGAGACAGAAAAAAACGTTTCGCT--TTTGGGAGAAGTGTGTTGAAA 277
*** ** * *** * ** ** * ** * ** * * ** *
consensus_6132#0 AAGTTAAGGGCAAG---ATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATC 715
consensus_6132#1 AAGTTAAGGGCAAG---ATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATC 549
consensus_6132#2 ATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACG 337
* * * * *** * ** *** *** ** ** * * * *** *
consensus_6132#0 TTTTT--ATCTTT-ATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCT 772
consensus_6132#1 TTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTC-GTATGTCATTGTTCGCTANGCT 608
consensus_6132#2 ATTTTCCTACACCTTCTTC-ACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTA 396
* ** * *** ** * * ** * * ** * ****** *
consensus_6132#0 NGTTGACTTTATTGTGTTAGT-ACAG-ATGTTTTTTTTTCTCTTCTTTAT-TGTGAGTAC 829
consensus_6132#1 TATTGACTA---TGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATAC 665
consensus_6132#2 ACGTAACTG----TAATCATT---------CTAGTTTCCAAACGTACTG--TAACGGTAC 441
* *** * * * * * * * ***
consensus_6132#0 ATATCGCAGGACGAAGAATG---------------TGGTGTGATGTAA----GGGGAAGG 870
consensus_6132#1 CCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGG 725
consensus_6132#2 -CGTAATTTACGTAATAATGC--------------TTTCTCCAAACAAGCAAACAAACGA 486
* * * * * * * *
consensus_6132#0 CC-GATATTTAA--TTGTAATTATAA---TTTAATATGCTTTTCTATTATTATTACCTA- 923
consensus_6132#1 CC-CGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAA 784
consensus_6132#2 ACGCCTGATAGATTTCGCATTTGATT--CATCGACTGT---------------------- 522
* * * * * * *
consensus_6132#0 -GTCAGTTTGTTGCTGTAAAGAC-ACGTG-AACCACGTGCCACGCTGTGTCACGTTGTCT 980
consensus_6132#1 AGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTAC 844
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 TTAACAATCAGAGCAGAGCAGTGCAATC---TAGCAACCAAAGCAAAAATGCCAAGGAAA 1037
consensus_6132#1 AAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAA--CCCAGCGCA 902
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 CGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGC 1097
consensus_6132#1 CCAAAGCGCGCGG-TGGCG--CAANNACAAANCCAGACAGCGCACAAGCNCGCAAACA-- 957
consensus_6132#2 ------------------------------------------------------------
consensus_6132#0 ACCAACTGATTACGAAATAGAGATCCAACAGGA------- 1130
consensus_6132#1 ACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA 997
consensus_6132#2 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||