These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1130 fasta sequence [GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATCTTTTTATCTTTATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCTNGTTGACTTTATTGTGTTAGTACAGATGTTTTTTTTTCTCTTCTTTATTGTGAGTACATATCGCAGGACGAAGAATGTGGTGTGATGTAAGGGGAAGGCCGATATTTAATTGTAATTATAATTTAATATGCTTTTCTATTATTATTACCTAGTCAGTTTGTTGCTGTAAAGACACGTGAACCACGTGCCACGCTGTGTCACGTTGTCTTTAACAATCAGAGCAGAGCAGTGCAATCTAGCAACCAAAGCAAAAATGCCAAGGAAACGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGCACCAACTGATTACGAAATAGAGATCCAACAGGA] [+] EMBL BX467347 [GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATT ] [+] EMBL BX623510 [ AGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGA TTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGT ] [+] EMBL BX626340 [ TTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGNACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAA AAACAAGATAAGTGCAATCAATTG TTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATCTTTTTATCTTTATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCTNGTTGACTTTATTGTGTTAGTACAGATGTTTTTTTTTCTCTTCTTTATTGTGAGTACATATCGCAGGACGAAGAATGTGGTGTGATGTAAGGGGAAGGCCGATATTTAATTGTAATTATAATTTAATATGCTTTTCTATTATTATTACCTAGTCAGTTTGTTGCTGTAAAGACACGTGAACCACGTGCCACGCTGTGTCACGTTGTCTTTAACAATCAGAGCAGAGCAGTGCAATCTAGCAACCAAAGCAAAAATGCCAAGGAAACGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGCACCAACTGATTACGAAATAGAGATCCAACAGGA] consensusID : consensus_6132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence [TCGCCCGAGGNTCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAAAAACAAGATAAGTGCAATCAATGTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATCTTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTCGTATGTCATTGTTCGCTANGCTTATTGACTATGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATACCCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGGCCCGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAAAGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTACAAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAACCCAGCGCACCAAAGCGCGCGGTGGCGCAANNACAAANCCAGACAGCGCACAAGCNCGCAAACAACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA] [+] EMBL AL930153 [TCGCCCGAGGNTCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGTACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAGTTACTGTTACGGTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGACTTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTATCCACTACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATATGAACGCGAAACAAAATACCAAAAACAAGATAAGTGCAATCAATGTTTGCAGGAACGAGTATAGGAAGTTAAGGGCAAGATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATCTTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTCGTATGTCATTGTTCGCTANGCTTATTGACTATGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATACCCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGGCCCGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAAAGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTACAAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAACCCAGCGCACCAAAGCGCGCGGTGGCGCAANNACAAANCCAGACAGCGCACAAGCNCGCAAACAACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA] consensusID : consensus_6132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CCGAAAAACATCTAATCGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGTGTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGAGAATACACTGTCCTCAAAGGACGGATAGCTGAAAAAGGGACAGATCTATGTGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTGTAATCATTCTAGTTTCCAAACGTACTGTAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGT] [+] EMBL BM623607 [CCGAAAAACATCTAATCGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGTGTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGAGAATACACTGTCCTCAAAGGACGGATAGCTGAAAAAGGGACAGATCTATGTGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACGTTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACGATTTTCCTACACCTTCTTCACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTAACGTAACTGTAATCATTCTAGTTTCCAAACGTACTGTAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAACGCCTGATAGATTTCGCATTTGATTCATCGACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6132#0 GGCAGAATCGGCACGAGGGTTGTTATAGGAGAGAACGTATTGTCGCGTGTGTCTTTTTTA 60 consensus_6132#1 ------------------------------------------------------------ consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 TTATTTTAAAAGTGTCATATGCTTAAACTGCGACACGATGGATGGAGACAGAAAAAAACG 120 consensus_6132#1 ------------------------------------------------------------ consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 TTTCGCTTTTGGGAGAAGTGTGTTGAAAATGCTCACGGCTTGTTAATGGGCCGCTACTTT 180 consensus_6132#1 ---------------------------------------TCGCC--CGAGGNTCTACTTT 19 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 GTTGCTATTGCTAGCTTCTATCCCAACGATTTTTCCTACACCTTCTTCACGCGGAACTAA 240 consensus_6132#1 GTTGCTATTGCTAGCTTCTATCCCAACGATTTT-CCTACACCTTCTTCACGCGGAACTAA 78 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 TTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGT 300 consensus_6132#1 TTATCTTTACCTTCTATATCGCTACGTAACGTAACTTTAATCATTCTAGTTTCCAAACGT 138 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 ACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAAC 360 consensus_6132#1 ACTATAACGGTACCGTAATTTACGTAATAATGCTTTCTCCAAACAAGCAAACAAACGAAC 198 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 GCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAG 420 consensus_6132#1 GCCTGATAGATTTCGCATTTGATTCATCGACTGTGGGTGCAATCTGAGAAAAAGGGGAAG 258 consensus_6132#2 --CCGAAAAA-----CATCTAAT-CGCGAAATAACAGTCCAATCGTGTGTGTGGGTGAGT 52 * ** * * *** * ** * * * ** ***** ** ** consensus_6132#0 TTACTGTTACGGTTTGTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGAC 480 consensus_6132#1 TTACTGTTACGGTT-GTTTATCTGTTCCTATCTGTTAAACGCTACGTTAGTATTTTAGAC 317 consensus_6132#2 GTGTTGTTAGTGATAAAAAGTAAGAGCAAACAGGAGAAAGGAGA---GAATACACTGTCC 109 * ***** * * * * * * * *** * * * ** * * consensus_6132#0 TTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTA 540 consensus_6132#1 TTACTGCTGTCCTATTCCTTGTGGATTTCTGCTGACGTACCTATTCTGTAACTATTTCTA 377 consensus_6132#2 TCAAAG--GACGGATAGCTGAAAAAGG------GACAGATCTATG-TGTTGTTATAGGAG 160 * * * * * ** ** * *** * **** *** *** consensus_6132#0 TCCAC-TACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATA-TGAACGCG 598 consensus_6132#1 TCCAC-TACTGCACTACCTTGCTATTGCATTCTTTTTATTAGTGCCAAATA-TGAACGCG 435 consensus_6132#2 AGAACGTATTGTCGCGTGTGTCTTTTTTATTATTTTAAA-AGTGTCATATGCTTAAACTG 219 ** ** ** * ** ** *** **** * **** ** ** * ** * consensus_6132#0 AAACANAATACCAAGAAACAAGATAAGTGCAATCAATTGTTTTGCAGGAACGAGTATAGG 658 consensus_6132#1 AAACAAAATACCAA-AAACAAGATAAGTGCAATCAAT--GTTTGCAGGAACGAGTATAGG 492 consensus_6132#2 CGACACGATGGATGGAGACAGAAAAAAACGTTTCGCT--TTTGGGAGAAGTGTGTTGAAA 277 *** ** * *** * ** ** * ** * ** * * ** * consensus_6132#0 AAGTTAAGGGCAAG---ATTAGCCACTAGTTTGTTGAGTTTGATTAAATTTATATTGATC 715 consensus_6132#1 AAGTTAAGGGCAAG---ATTAGCCACTAGTTCGTNGAGTCGATTAAACTTTATATTGATC 549 consensus_6132#2 ATGCTCACGGCTTGTTAATGGGCCGCTACTTTGTTGCTATTGCTAGCTTCTATCCCAACG 337 * * * * *** * ** *** *** ** ** * * * *** * consensus_6132#0 TTTTT--ATCTTT-ATTTCGACAAGCAGGTAGATGTNTGTATTGTATTGTTCGCTAAGCT 772 consensus_6132#1 TTNTTTCATCTTTTATTTCGACAAGCAGGTAGATGTC-GTATGTCATTGTTCGCTANGCT 608 consensus_6132#2 ATTTTCCTACACCTTCTTC-ACGCGGAACTAATTATCTTTACCTTCTATATCGCTACGTA 396 * ** * *** ** * * ** * * ** * ****** * consensus_6132#0 NGTTGACTTTATTGTGTTAGT-ACAG-ATGTTTTTTTTTCTCTTCTTTAT-TGTGAGTAC 829 consensus_6132#1 TATTGACTA---TGNGTCAGTCACAGCATGTTNCTCCTCTTCCACACTAGGTGAAGATAC 665 consensus_6132#2 ACGTAACTG----TAATCATT---------CTAGTTTCCAAACGTACTG--TAACGGTAC 441 * *** * * * * * * * *** consensus_6132#0 ATATCGCAGGACGAAGAATG---------------TGGTGTGATGTAA----GGGGAAGG 870 consensus_6132#1 CCATAATNCGGCCACGGACGCACAGCAACTGCGGGNGGTGCCACGTCACGCGGGCAACGG 725 consensus_6132#2 -CGTAATTTACGTAATAATGC--------------TTTCTCCAAACAAGCAAACAAACGA 486 * * * * * * * * consensus_6132#0 CC-GATATTTAA--TTGTAATTATAA---TTTAATATGCTTTTCTATTATTATTACCTA- 923 consensus_6132#1 CC-CGCACTNNAACNCGCACTCACNCAACNCAAACAGGCGCACCAAGAAAAATAACCCAA 784 consensus_6132#2 ACGCCTGATAGATTTCGCATTTGATT--CATCGACTGT---------------------- 522 * * * * * * * consensus_6132#0 -GTCAGTTTGTTGCTGTAAAGAC-ACGTG-AACCACGTGCCACGCTGTGTCACGTTGTCT 980 consensus_6132#1 AGANAGAGGACGGCGGTACAGACCACGTGGAACCAGGGCACAGACCGGGCANTGGCCTAC 844 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 TTAACAATCAGAGCAGAGCAGTGCAATC---TAGCAACCAAAGCAAAAATGCCAAGGAAA 1037 consensus_6132#1 AAACNAANCAGAACAGGGCACCTAAAACACANNGCAACCAGCCCTGGAA--CCCAGCGCA 902 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 CGACAGCGATCAAATAGAGGCCGCGTGTGGTGCACAAAAGCACACAAGCCAGTACACAGC 1097 consensus_6132#1 CCAAAGCGCGCGG-TGGCG--CAANNACAAANCCAGACAGCGCACAAGCNCGCAAACA-- 957 consensus_6132#2 ------------------------------------------------------------ consensus_6132#0 ACCAACTGATTACGAAATAGAGATCCAACAGGA------- 1130 consensus_6132#1 ACCNACGGGGNTCAAAACAACAACAACACAACAACGCGAA 997 consensus_6132#2 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||