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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1521 fasta sequence
[CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCGGCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCACAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGCCCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTGAAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAGATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAACGACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTGAATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAAACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAGTACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAGGCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTGGCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAA------TGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCTTCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTT]
[+] EMBL BM617109 [CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCGGCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCACAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGCCCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTGAAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAGATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAACGACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTGAATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAAACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCA ]
[+] EMBL BX618227 [ TGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAGTACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAGGCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTGGCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTT ]
[+] EMBL BM625001 [ ccgCGGAAGAGCTGAACGCGCTGGCAGCACTTGCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGACCCGGTGGCCCGTTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTAGTGTGCCGCCGGCCCAACGTTCGGCTGCCGGTTCGGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAATGTGGCTGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCAC ]
[+] EMBL BM629093 [ ccgGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAGACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAA TGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCTTCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTT]
consensusID : consensus_6143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[AGGCAAGAATCNCNCACGAGGCGCTCGAGCAGGCTTTACAGTGAGCACAGAGTAGGAGCAGCCTCTTGACCAGCCAAGGTCACGAAGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGGCAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGATGGTGAGGAAGCCTTCTGGTTTCGCCGCGAACAGTGTGTGTTAGTGTGCGTGAGTGAATTTTCTTGCTAAAGTAACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACAACAACGCTTCAAGCTTGAGGTGGTGGCGACAGCGTGGCATTCTAGGGCACGACTGCCGAACGACCAAAAATGTGATGATATTTACCTTTGTTTTCAAACACTTTTTTTACTAGCTCTTAGCTTATGAATATTGATAATGATTTTGATTGTTTGTTTAATTTGTGTTNAAGTGGTCCTGTGTACACCTTATTT]
[+] EMBL BX467662 [AGGCAAGAATCNCNCACGAGGCGCTCGAGCAGGCTTTACAGTGAGCACAGAGTAGGAGCAGCCTCTTGACCAGCCAAGGTCACGAAGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGGCAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGATGGTGAGGAAGCCTTCTGGTTTCGCCGCGAACAGTGTGTGTTAGTGTGCGTGAGTGAATTTTCTTGCTAAAGTAACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACAACAACGCTTCAAGCTTGAGGTGGTGGCGACAGCGTGGCATTCTAGGGCACGACTGCCGAACGACCAAAAATGTGATGATATTTACCTTTGTTTTCAAACACTTTTTTTACTAGCTCTTAGCTTATGAATATTGATAATGATTTTGATTGTTTGTTTAATTTGTGTTNAAGTGGTCCTGTGTACACCTTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6143#0 CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCG 60
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 GCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCA 120
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 CAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGC 180
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 CCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTG 240
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 AAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAG 300
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 ATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAAC 360
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 GACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTG 420
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 AATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAA 480
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 ACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGAC 540
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 CTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTG 600
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 GTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAG 660
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 TACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAG 720
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 GCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTG 780
consensus_6143#1 ---------------------------------------------AGGCAAGAATCNCNC 15
** * * *
consensus_6143#0 GCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGA 840
consensus_6143#1 ACGAGGCGCTCGAGCAGGCTTTACAGTG-AGCA-CAG-AGTAGGAGCA---GCCTCTTGA 69
* * ** *** * * * **** *** ***** * ***** **
consensus_6143#0 ACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGAT 900
consensus_6143#1 CCAGCCAAGGTCACGA----AGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGG-- 123
** * * *** **** * * * **** * **** * * * *
consensus_6143#0 CCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTC-CTCGGGCGGTGGCGCATCCGTTCC 959
consensus_6143#1 CAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGA--TGGTGAG 181
* ** * * ** ** ** * * ** * * *** * ***** **
consensus_6143#0 CCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGC-CCAACGTTCGGCAGCCGGCTCAGCGT 1018
consensus_6143#1 GAAGCCTTCTGGTTTCGCCG-CGAACAGTGTGTGTTAGTGTGCGTGAGT-GAATTTTCTT 239
* **** * ** * * * * * * ** ** ** * * * *
consensus_6143#0 CGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCT 1078
consensus_6143#1 GCTAAAGT--AACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTA 297
** ** * * * ** ** * ** ******** * ***
consensus_6143#0 GTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGC 1138
consensus_6143#1 GTGACAA--AACAACAAA--TGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACA 353
*** * ** * ** * ** * *** * * * * *
consensus_6143#0 GCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTG 1198
consensus_6143#1 ACAAC-GCTTCAAGCTTGAGGTGGTGGC-GACAGCGTGGCATTCTAGGGCACGACTGCCG 411
* * ** ** * ** ** ** * * * ******* * * *
consensus_6143#0 CCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCAC 1258
consensus_6143#1 AACG--ACCAAAAATGTG-ATGATATTTACC-----TTTGTTTTCAAACACTTTTTTTAC 463
* **** * * ** * *** * * * * **** *** * * **
consensus_6143#0 AAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTA 1318
consensus_6143#1 TAGCTCTTAGCTTATGAATATTGATAATGA---TTTTG---ATTGTTTGTTTAATTTGTG 517
* * * * ** **** * * *** * *** ** ** *******
consensus_6143#0 GCTTGCTT-TCCGTTGTGCGCGCTAGCGTGAATGTATGTGAAACCTTCCTGGATATATCC 1377
consensus_6143#1 TTNAAGTGGTCCTGTGTACACCTTATTT-------------------------------- 545
* *** *** * * **
consensus_6143#0 TTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCT 1437
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 TCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGT 1497
consensus_6143#1 ------------------------------------------------------------
consensus_6143#0 GACAAAACAACAAATGTGTGTGTT 1521
consensus_6143#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||