These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 938 fasta sequence [AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCATTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGGATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATGGGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACACTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAAGGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAAGCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG] [+] EMBL BX604184 [AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACAC ] [+] EMBL BM651064 [ ccGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAGAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTC ] [+] EMBL BX612877 [ TGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCATTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGGATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATGGGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACACTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAAGGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAAGCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG] consensusID : consensus_6144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAATAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCATTAGACTGAAACGTGTTGGGCCATTGGTGGTTATTTATCGCTAGACAGATAAAAGAGACAGCAAGGGAGGGAGAGCATGGAAAGGAGAAAGGAAAGGTGCACGATACATTCTGCAAAGGAAAGGGTGTAAACTGCTAATACAACAGACACACACAAAGAGAGAAGTGTGCGAGAAAGATAAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTTTAAAAAGCAAAACTACACAAAAAGGGGGAGATAGCAGAAACGGAGAAAGAAACTACACCAGAAAACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGAATGAAAAAAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGG] [+] EMBL BM634409 [CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAATAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCATTAGACTGAAACGTGTTGGGCCATTGGTGGTTATTTATCGCTAGACAGATAAAAGAGACAGCAAGGGAGGGAGAGCATGGAAAGGAGAAAGGAAAGGTGCACGATACATTCTGCAAAGGAAAGGGTGTAAACTGCTAATACAACAGACACACACAAAGAGAGAAGTGTGCGAGAAAGATAAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTTTAAAAAGCAAAACTACACAAAAAGGGGGAGATAGCAGAAACGGAGAAAGAAACTACACCAGAAAACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGAATGAAAAAAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGG] consensusID : consensus_6144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGACAAGGAAAAGTATAGAAATGAAGCAAATAATAAAAACA] [+] EMBL BX610182 [GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGACAAGGAAAAGTATAGAAATGAAGCAAATAATAAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6144#0 AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTT 60 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 AAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAA 120 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 AGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAA 180 consensus_6144#2 -GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAA 59 consensus_6144#1 --------------CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAA 46 * * * ******* ** * * ** consensus_6144#0 TACACCATTCG-CTTTAGCTAACGAGTTCGGCGTGATGTC-CATCTCTGTGTGTGCGTGC 238 consensus_6144#2 TACACCATTCG-CTTTAGCTAACGAGTTCGGCGTGATGTC-CATCTCTGTGTGTGCGTGC 117 consensus_6144#1 TAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCAT-TAGACTGAA 105 ** *** ***** * * ** ** * * *** * * * * consensus_6144#0 GTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGC 298 consensus_6144#2 GTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGC 177 consensus_6144#1 ACGTGTTGGGCCATTGGTGGTTATT-TATCGCTAGACAGATAAAAGAGACAGCAAGG-GA 163 * ** * ** *** * ** ** ** * * * * * * * consensus_6144#0 GTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAG 358 consensus_6144#2 GTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAG 237 consensus_6144#1 GGGAGAGCATGGAAAGGA-GAAAGGAAAGGTGCACGATACATTCTGC---AAAGGAAAGG 219 * * * * *** *** * * * * *** *** ** * *** *** * consensus_6144#0 GCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGAT 418 consensus_6144#2 GCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGAC 297 consensus_6144#1 GTGTAAACTGCTAATACA----ACAGACACACACAAAGAGAGAAGTGTGCGAG-AAAGAT 274 * *** * * * * **** * * ** *** *** * ** consensus_6144#0 GCTGTGGTCGTATGAGTATAACAATTT-GTTTTTAATTTTAACGAACTGTGATGTAAAAA 477 consensus_6144#2 AAGG-------AAAAGTATAGAAATGAAGCAAATAATAAAAACA---------------- 334 consensus_6144#1 AAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTT----TAAAAA 330 * ** * ** * * consensus_6144#0 ACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAA 537 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 GCAAAACTACACAAAAAGGGGGAGA---TAGCAGAAACGGAGAAAGAAACTACACCAGAA 387 consensus_6144#0 GAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCA 597 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 AACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGA-A 446 consensus_6144#0 TTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGG 657 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 TGAAAAAAGATGAAAAGTTAAAGTCCA--CAAGTAATGTTTTGTGTATGTTTGG------ 498 consensus_6144#0 ATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATG 717 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 GGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACA 777 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 CTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAA 837 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 GGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAA 897 consensus_6144#2 ------------------------------------------------------------ consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 GCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG 938 consensus_6144#2 ----------------------------------------- consensus_6144#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||