These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1187 fasta sequence [ATTAAAATTAGTATCCGCTCTACCAAACCTCGTGAAATTCATTTCATTCAAATTGAAACGAATGTTCCCGTTCCCCTAGAAACTCCATTTTGCACTGCGCGTCAACATCAACATTTTGATCTAGGCGGCTAGGACGGCTAGGACCTGAGCGGTAAATGAGAGGAGATTAGGTGGTGCGCCAAACACTGATTTTGGTGGGCTTAGGCATAGGAATTCAAAAAAAGGAACGTTTCTAGACAATCGATTAAATTCGGCGCACAAGCACAAGCGCAAAGGGTTTGATCTGGCCCAGGCCCTGCGTTGTAAGGGCGTAAGGGAACTGCTGACAACATTTATCCCAGCACTGGCACTGCATCTGGAACCGGTCTTTTCACTGATCCCGAACCTTAACCGTTCCTGGTAGCTACTCCCTAATATTTGAAATGGATCTGATACCGAAATCACATTTATCTTGGATCGCAACCCCTAGCGGATACCAATCCGGAATCAGACTAGCATTAAAACATGTGCATCTTGGTATATTTTAGTCAAAATCAAATCTTTCTTGAACACCACTAAAAACAATATTTGTTCTCCCTAATAACTGCAATGTTCTCCTTATTAGGAAGTTAGCCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCGCGAATTTATATAACCATATCCATAGCGGTCTAGGGACGGATTCTGAATCTATCTCAATCTAGATATCTTTTGCCAAACCTGGCCCGGAATAGATCACGGACCTATCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAAATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCATGATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAATAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACT] [+] EMBL BX626710 [ATTAAAATTAGTATCCGCTCTACCAAACCTCGTGAAATTCATTTCATTCAAATTGAAACGAATGTTCCCGTTCCCCTAGAAACTCCATTTTGCACTGCGCGTCAACATCAACATTTTGATCTAGGCGGCTAGGACGGCTAGGACCTGAGCGGTAAATGAGAGGAGATTAGGTGGTGCGCCAAACACTGATTTTGGTGGGCTTAGGCATAGGAATTCAAAAAAAGGAACGTTTCTAGACAATCGATTAAATTCGGCGCACAAGCACAAGCGCAAAGGGTTTGATCTGGCCCAGGCCCTGCGTTGTAAGGGCGTAAGGGAACTGCTGACAACATTTATCCCAGCACTGGCACTGCATCTGGAACCGGTCTTTTCACTGATCCCGAACCTTAACCGTTCCTGGTAGCTACTCCCTAATATTTGAAATGGATCTGATACCGAAATCACATTTATCTTGGATCGCAACCCCTAGCGGATACCAATCCGGAATCAGACTAGCATTAAAATATGTGCATCTTGGTATATTTTAGTCAAAATCAAATCTTTCTTGAACACCACTAAAAACAATATTTGTTCTCCTTAATAACTGCAATGGTCTCCTTATTANGAAGTTAGNCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCGCGAATTTAT ] [+] EMBL BX621426 [ tACAAGCGCAAAGGGTTTGATCTGGCCCAGGCCCTGCGTTGTAAGGGCGTAAGGGAACTGCTGACAACATTTATCCCAGCACTGGCACTGCATCTGGAACCGGTCTTTTCACTGATCCCGAACCTTAACCGTTCCTGGTAGCTAATCCCTAATATTTGAAATGGATCTGATACCGAAATCACATTTATCTTGGATCGCAACCCCTAGCGGATACCAATCCGGAATCAGACTAGCATTAAAACATGTGCATCTTGGTATATTTTAGTCAAAATCAAATCTTTCTTGAACACCACTAAAAACAATATTTGTTCTCCCTAATAACTGCAATGTTCTCCTTATTAGGAAGTTAGCCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCGCGAATTTATATAACCATATCCATAGCGGTCTAGGGACGGATTCTGAATCTATCTCAATCTAGATATCTTTTGCCAAACCTGGCCCGGAATAGATCACGGACCTATCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATT ] [+] EMBL BX614906 [ AGCGGATACCAATCCGGAATCAGACTAGCATTAAAACATGTGCATCTTGGTATATTTTAGTCAAAATCAAATCTTTCTTGAACACCATTAAAAACAATATTTGTTCTCCCTAATAACTGCAATGTTCTCCTTATTAGGAAGTTAGCCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCGCGAATTTATATAACCATATCCATAGCGGTCTAGGGACGGATTCTGAATCTATCTCAATCTAGATATCTTTTGCCAAACCTGGCCCGGAATAGATCACGGACCTATCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAAATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCATGATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAATAGCGCA ] [+] EMBL BM629871 [ ccgATTAAAACATGTGCATCTTGGTATATTTTAGTCAAAATCAAATCTTTCTTGAACACCACTAAAAACAATATTTGTTCTCCCTAATAACTGCAATGTTCTCCTTATTAGGAAGTTAGCCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCGCGAATTTATATAACCATATCCATAGCGGTCTAGGGACGGATTCTGAATCTATCTCAATCTAGATATCTTTTGCCAAACCTGGCCCGGAATAGATCACGGACCTATCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAAATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCATGATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAATAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACT] consensusID : consensus_6146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [GAGGCAGAATCGGCACGAGGCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAAATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCATGATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAATAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACTAGGAGCAAAGATCGAAAAGTAAAACCGAAAGCTAATGTATTGTGATAAAGAAAGTAATGTTGTTTGGCCATACATTTACTCCATGCAAAAGGAAAATGTACAAACAGATTTATTTGAGAATGATGGCTAAAAACTAAAGTCCAAGGGCAAGGCGAACGAAACTGCAAGAAGGTAAAACGTAATGATGCAGAGCAAACAGATGGAAACAGTGGGGAATAGAAGAAAGCGATAAGAACTACTCAGGAATATTNTATTGATTGGTACCCTTTAAGAGGNGNNGGAGGCNAGGAGAGAGAGGNGGCANA] [+] EMBL BX467594 [GAGGCAGAATCGGCACGAGGCCCGATCCAGCAACCGGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGAGATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTATACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCGAACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAAATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCATGATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAATAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACTAGGAGCAAAGATCGAAAAGTAAAACCGAAAGCTAATGTATTGTGATAAAGAAAGTAATGTTGTTTGGCCATACATTTACTCCATGCAAAAGGAAAATGTACAAACAGATTTATTTGAGAATGATGGCTAAAAACTAAAGTCCAAGGGCAAGGCGAACGAAACTGCAAGAAGGTAAAACGTAATGATGCAGAGCAAACAGATGGAAACAGTGGGGAATAGAAGAAAGCGATAAGAACTACTCAGGAATATTNTATTGATTGGTACCCTTTAAGAGGNGNNGGAGGCNAGGAGAGAGAGGNGGCANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6146#0 ATTAAAATTAGTATCCGCTCTACCAAACCTCGTGAAATTCATTTCATTCAAATTGAAACG 60 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AATGTTCCCGTTCCCCTAGAAACTCCATTTTGCACTGCGCGTCAACATCAACATTTTGAT 120 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 CTAGGCGGCTAGGACGGCTAGGACCTGAGCGGTAAATGAGAGGAGATTAGGTGGTGCGCC 180 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AAACACTGATTTTGGTGGGCTTAGGCATAGGAATTCAAAAAAAGGAACGTTTCTAGACAA 240 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 TCGATTAAATTCGGCGCACAAGCACAAGCGCAAAGGGTTTGATCTGGCCCAGGCCCTGCG 300 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 TTGTAAGGGCGTAAGGGAACTGCTGACAACATTTATCCCAGCACTGGCACTGCATCTGGA 360 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 ACCGGTCTTTTCACTGATCCCGAACCTTAACCGTTCCTGGTAGCTACTCCCTAATATTTG 420 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AAATGGATCTGATACCGAAATCACATTTATCTTGGATCGCAACCCCTAGCGGATACCAAT 480 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 CCGGAATCAGACTAGCATTAAAACATGTGCATCTTGGTATATTTTAGTCAAAATCAAATC 540 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 TTTCTTGAACACCACTAAAAACAATATTTGTTCTCCCTAATAACTGCAATGTTCTCCTTA 600 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 TTAGGAAGTTAGCCCTCTGATCTCCTTCTCCTGCGTACCTCCTTTTCATTCTCTTTCCCG 660 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 CGAATTTATATAACCATATCCATAGCGGTCTAGGGACGGATTCTGAATCTATCTCAATCT 720 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AGATATCTTTTGCCAAACCTGGCCCGGAATAGATCACGGACCTATCCCGATCCAGCAACC 780 consensus_6146#1 -------------------------GAGGCAGAATCGGCACGAGGCCCGATCCAGCAACC 35 * *** * ** *************** consensus_6146#0 GGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGA 840 consensus_6146#1 GGTCCCATAACCATGGTTGGTCTATGAAAAGATACTATCCCTTTAAATAATTGGTCTGGA 95 ************************************************************ consensus_6146#0 GATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTAT 900 consensus_6146#1 GATGATGAGTATTGAAATGTGTTTGGCAATTCATTGCGTCTTATTTGAAAAATGATTTAT 155 ************************************************************ consensus_6146#0 ACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCG 960 consensus_6146#1 ACTTTTCTTATTGACCCTACATGAATGCTCAAGGACCTAAGATACGCAGAACAAATATCG 215 ************************************************************ consensus_6146#0 AACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAA 1020 consensus_6146#1 AACGATGTAAACCAAACGCGAAACGAATTGCAAATTTACAATGAGAAGATACACAAATAA 275 ************************************************************ consensus_6146#0 ATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCAT 1080 consensus_6146#1 ATAAATAAATAAATAAACAAAAATTATGAATAAAACTGACAGGCTGATGATAATGATCAT 335 ************************************************************ consensus_6146#0 GATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAA 1140 consensus_6146#1 GATGGTGCAGATATGGCGTTGATGCAGGTGAAGATGAAAGAGACATGTAAAACCAAGCAA 395 ************************************************************ consensus_6146#0 TAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACT------------- 1187 consensus_6146#1 TAGCGCACTTATTATGGAAAAAAAACATGTAAACATTACACGTAACTAGGAGCAAAGATC 455 *********************************************** consensus_6146#0 ------------------------------------------------------------ consensus_6146#1 GAAAAGTAAAACCGAAAGCTAATGTATTGTGATAAAGAAAGTAATGTTGTTTGGCCATAC 515 consensus_6146#0 ------------------------------------------------------------ consensus_6146#1 ATTTACTCCATGCAAAAGGAAAATGTACAAACAGATTTATTTGAGAATGATGGCTAAAAA 575 consensus_6146#0 ------------------------------------------------------------ consensus_6146#1 CTAAAGTCCAAGGGCAAGGCGAACGAAACTGCAAGAAGGTAAAACGTAATGATGCAGAGC 635 consensus_6146#0 ------------------------------------------------------------ consensus_6146#1 AAACAGATGGAAACAGTGGGGAATAGAAGAAAGCGATAAGAACTACTCAGGAATATTNTA 695 consensus_6146#0 ---------------------------------------------------- consensus_6146#1 TTGATTGGTACCCTTTAAGAGGNGNNGGAGGCNAGGAGAGAGAGGNGGCANA 747 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||