These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 951 fasta sequence [GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCACTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTCGG-CCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTCAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAGAAGCGGTGTTAGTGATAGTACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTTTTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGTTGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAAGAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATACCGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA] [+] EMBL AL697613 [GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCACTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTCGG CCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTCAATGGCATCATTTTACCTCTGCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCCCGCACAAAGTCCGAGTCGGAGGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCG CCAACGGCAGCAAACGGCACAAGAAGCGGGG CTGCTGGAGGAAATTCCCATGCTCGATGGAAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCTAAACCGCGCGAACGCACAAGCAAGCACAA CCGGAGCCGGAGTATATAAACGTGAAAGGA ] [+] EMBL CNS08OIP [ TCACTATCTCGAACTGAATGAGCCATACCTACAAATGACTGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTTGGCCCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTTAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGTCATTCGCCCACGATACGAAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCC ] [-] EMBL CNS08OIQ [ TCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGTCATTCGCCCACGATACGAAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAGCCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAG ] [+] EMBL AGA281289 [ ACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTCAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTACATTGCGCTCAGTATGGTGGATGAGAAGCGGTGTTAGTGATAGTACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTTTTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGTTGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAAGAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATACCGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA] consensusID : consensus_6149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CAACACGGAAGTGACCGCCATGACATCGGTTGAAGTGGAAGACTTGAACTCGGTCAATTCGAATGAGCCGCTATGGCGCTCCAACTACGGCATGGACTACAAGGGACCGGCACGCACCGTCAACACGACCGATCTGGTTTGCTGGGCGTCACAGATTGCCTGCGGCATGGAGTATCTGGCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATACTGCTGTGCGACGACAATGTGGTGAAGATCTGTGACTTCGGGTTGGCTCGGTCGATGTACAAGAGCGACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCATTGGCGACAATGTGTTCAGCACGTACTCGGACGTGTGGGCTTACGGTATAGTGCTGTGGGAGCTGTTTTCACTCGGCAAAGTGCCTTACCCAGGGATGGAGGCGAACCAGGAGCTGTACAATAAGCTGCGCGATGGCTACCGGATGGATAAGCCACAGTACTCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGCGACCATCGTTTAAGGATCTGAAGAGCAGGTTCAATGCAATGCTTCCCGGATGATATGCGAGATCACTATCTCGAACTGAATGAGCCATACCTACAA] [+] EMBL BX601866 [CAACACGGAAGTGACCGCCATGACATCGGTTGAAGTGGAAGACTTGAACTCGGTCAATTCGAATGAGCCGCTATGGCGCTCCAACTACGGCATGGACTACAAGGGACCGGCACGCACCGTCAACACGACCGATCTGGTTTGCTGGGCGTCACAGATTGCCTGCGGCATGGAGTATCTGGCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATACTGCTGTGCGACGACAATGTGGTGAAGATCTGTGACTTCGGGTTGGCTCGGTCGATGTACAAGAGCGACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCATTGGCGACAATGTGTTCAGCACGTACTCGGACGTGTGGGCTTACGGTATAGTGCTGTGGGAGCTGTTTTCACTCGGCAAAGTGCCTTACCCAGGGATGGAGGCGAACCAGGAGCTGTACAATAAGCTGCGCGATGGCTACCGGATGGATAAGCCACAGTACTCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGCGACCATCGTTTAAGGATCTGAAGAGCAGGTTCAATGCAATGCTTCCCGGATGATATGCGAGATCACTATCTCGAACTGAATGAGCCATACCTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6149#0 GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCA 60 consensus_6149#1 ------------------------------------------------------------ consensus_6149#0 CTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGA 120 consensus_6149#1 ------------------------------------------------------------ consensus_6149#0 TACCGATTACCTGGCTAATCTCGGCCTCCAGAAGAACCAGCACCAGCGGCACCAAACTAT 180 consensus_6149#1 ------------------------------------------------------------ consensus_6149#0 GTCAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTAC 240 consensus_6149#1 -----------------------------------------------CAACACGGAA--- 10 * *** *** consensus_6149#0 CTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTC 300 consensus_6149#1 --GTGACCGCCATG-ACATCGGTTGAAGTGGAAGACTTGAACTCGG--TCAATTCGAATG 65 * * ** * *** * ** ****** **** * * * consensus_6149#0 AACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGC 360 consensus_6149#1 AGCCGCTATGGCGCTCCAACTACGGCATGGACTA--CAAGGGACCGGCACGCACCGTCAA 123 * * ** ** ** * * * *** * * * * * * ** * *** * consensus_6149#0 AGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGG 420 consensus_6149#1 CACGACCGATCTGGTTTGCTGGGCGTCACAGA----TTGCCTGCGG-CATGGAGTATCTG 178 * * ** ** **** * * ** * ** * * * * * * * consensus_6149#0 TTATCGTCCACGGCGA-ACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAA 479 consensus_6149#1 GCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATA--CTGCTGTGCGACG 236 **** ** ** * * * * ** *** *** * * * * consensus_6149#0 ACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAG 539 consensus_6149#1 ACAATGTGG-----TGAAGATCTGTGACTTCGGGTTGGC-TCGGTCGATGTACAAGAGCG 290 ** * * * * ** * * ** * * * ** *** * consensus_6149#0 TAAGGTTGGTGGTGTTGGACGG-GCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGA 598 consensus_6149#1 ACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCA 350 * * * * ** * ******** * * *** * **** * consensus_6149#0 TCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAGAAGCGGTGTTAGTGATAGT 658 consensus_6149#1 TTGGCGA--CAATGTGTTCAGCACGTACTCGGACGTGTG------GGCTTACGGTATAGT 402 * ** * * ** ** * * * * ** ** * * ***** consensus_6149#0 ACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTT 718 consensus_6149#1 GCTGTGGGAGCTGTTT-TCACTCGGCAAAGTGCCTTACCCAGG--GATGGAGGCGAACCA 459 *** * * *** ** * * ** * * * ** * ** ** * consensus_6149#0 TTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGT 778 consensus_6149#1 GGAGCTGTACAAT-AAGCTGCGCGAT---GGCTACCGGA----TGGATAAGCCACAGTAC 511 ** * ** * * ***** * *** *** ** *** * * * consensus_6149#0 TGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAA 838 consensus_6149#1 TCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGC-- 569 * ** * * * *** ** **** ** *** ** *** ** ** consensus_6149#0 GAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATAC 898 consensus_6149#1 -----GACCATCGTTTA-AGGATCTGAAGA-GCAGGTTCAATGCAATGCTTCCCGGATGA 622 ** *** * *** * ** **** ** *** * * ** * * ** consensus_6149#0 CGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA 951 consensus_6149#1 TA-TGCGAGAT-CACTATCTCGAACTGAATGAGCCATACCTACAA-------- 665 ** * * ** * ** ** * * * * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||