These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 933 fasta sequence [CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGCCCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGCGGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAAAGGCACCCCAGCCATTCAGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGAGGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACG--G-CGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTACTCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAGAGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA] [+] EMBL BM601734 [CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGCCCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGCGGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAAAGGCACCCCAGCCATTCAGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGAGGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACG G CGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGG ] [+] EMBL BX629063 [ GTGACACAAGAAAATAGAATCCCTTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACAGCGAGTCACGGGTGACGACGACGACGACGCGGTACACAGCGAACGCGGCACAGAAGAGCAACAGTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTACTCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAGAGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA] [+] EMBL BX614176 [ GAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGATAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGT ] consensusID : consensus_6152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [TGCCCGAGGNTCCATCGATGTACGAACGGGTCGAATATGCATTTCTGTGTTTTTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATGTCTGGTTCTTCCAATAATCATTGTTTGTGTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCATCCAAAACAAAAAAAACACTATCAGGGATGGCGCGGAAGTACCAGTGCCAGCAATTATTACTACCGCAGACATTTCCGCATTTGTGATTACTATGTGTAAAAGGGGGACGAGACAACGAAGAAAGGAAGGAAAGAAGGGAGGAATGTATTTAAAAATAAAAGAAGAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGAAGTAAAGACATGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGAGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGAT] [+] EMBL AL933803 [TGCCCGAGGNTCCATCGATGTACGAACGGGTCGAATATGCATTTCTGTGTTTTTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATGTCTGGTTCTTCCAATAATCATTGTTTGTGTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCATCCAAAACAAAAAAAACACTATCAGGGATGGCGCGGAAGTACCAGTGCCAGCAATTATTACTACCGCAGACATTTCCGCATTTGTGATTACTATGTGTAAAAGGGGGACGAGACAACGAAGAAAGGAAGGAAAGAAGGGAGGAATGTATTTAAAAATAAAAGAAGAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGAAGTAAAGACATGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGAGAAAAGCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTTATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGAAGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAACTGTGAT] consensusID : consensus_6152#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [CCGCTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAAGGTGGCCTAAGTGTGTGTGTGTGTTTGCAGTGGTAGTATGCAAGTGTGTGAGCACATAAGGAAGTGAATATTACGAAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGCAGTGTGTGTGTGCGTTCATAGTAATTATCCAGTAGCGCAAGTAGAGTTGCTAGCGGACTGCCGAACTACTACAGTACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTACCTCTACAGTACAGCGCAGCGGCACATCACAGCCATAAACACAGCAGCCACAGAATGAGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC] [+] EMBL BM639800 [CCGCTCTTCCTCCAGCAGCAGTAGCTGAAGCTGAGCGAAGCAAACGAAACTCTGGGATAAATAATTCGGCGTCGTACAGTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAAGGTGGCCTAAGTGTGTGTGTGTGTTTGCAGTGGTAGTATGCAAGTGTGTGAGCACATAAGGAAGTGAATATTACGAAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGCAGTGTGTGTGTGCGTTCATAGTAATTATCCAGTAGCGCAAGTAGAGTTGCTAGCGGACTGCCGAACTACTACAGTACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTACCTCTACAGTACAGCGCAGCGGCACATCACAGCCATAAACACAGCAGCCACAGAATGAGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6152#0 CCGCGGACGCGTGGGTCAAGACGCGCGATGTCGCAATTGGTGCAGCGCACGGCCAGCAGC 60 consensus_6152#1 ------------------------------------------------------------ consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 CCCACAGTATGCCCCGTCGTGCCCTTCTGGTCGTGGTAGTTTGCTGTTGCCGTTGAGTGC 120 consensus_6152#1 ------------------------------------------------------------ consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 GGGGACCACGGAAAACCGCGTAAAGCTGACTGATAGGGAAAA-AGGCACCCCAGCCATTC 179 consensus_6152#1 ------TGCCCGAGGNTCCATCGATGT-ACGAACGGGTCGAATATGCATTTCTGT-GTTT 52 consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 AGAGCGTCATAAACAGTGTGTGCAAACGGCGGCACCAGCTTGGTAGCGATCGGGGTCGGA 239 consensus_6152#1 TTTTCTTCTTCTTCTTTTTTGTTTCATTTCATTTCCTTCTTTTTTATG-TCTGGTTC--- 108 consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 GGTGTGTCGACGCGTAGTGTGTAGTGTGTGGCTGTGTGTGACACAAGAAAATAGAATCCC 299 consensus_6152#1 -TTCCAATAAT-CATTGTTTGT-GTGCGTGTGTGTGTCTGTCCAAACACATCCAAATTCA 165 consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 TTCGGGCAGACTCCAGATTGGTGGTAGAGTGCGCGCGGTCCTTCACGGGGTAACGAAACA 359 consensus_6152#1 TCCAAAACAAA--AAAAACACTATCAGGGATGGCGCGG---------AAGTACCAGTGCC 214 consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 GCGAGTCACGGGTGACGACGGCGACACGGTACACAGCGAACGCGGCACAGAAGAGCAACA 419 consensus_6152#1 AGCAATTATTACTACCGCAGACATTTCCGCAT-TTGTGATTACTATGTGTAAAAGGGGGA 273 consensus_6152#2 ------------------------------------------------------------ consensus_6152#0 GTGATCATTCTGGTTTCGTCTTCGGCAGCGGCAAGGCACTCGACTCTTCCTCCAGCAGCA 479 consensus_6152#1 CGAGACAACGAAGAAAGGAA--GGAAAGAAGGGAGGAAT--GTATTTAAAAATAAAAGAA 329 consensus_6152#2 ----------------------------------------CCGCTCTTCCTCCAGCAGCA 20 * * * ** * consensus_6152#0 GTAGCTGAAGCTGAGCGAAGCAA--ACGAAACTCTGGGATAAATAATTCGGCGTCGTACA 537 consensus_6152#1 GAGATTTCATATGTACTAAACAACAACGAAATTGAGGAAAAGATTTCCGGATTTCGGA-- 387 consensus_6152#2 GTAGCTGAAGCTGAGCGAAGCAA--ACGAAACTCTGGGATAAATAATTCGGCGTCGTACA 78 * * * ** * ** *** ****** * ** * * ** * *** * consensus_6152#0 GTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGAAAA 597 consensus_6152#1 ---AGTAAAGACA-TGTAAAGGACAAGAGAGGGAAAGATAGAGAGGAAAATAGA-GAAAA 442 consensus_6152#2 GTTGGTAGACTTACTGCGACAGCCTACTTCGACGGACCCACACAGTAGTGTAATCGGAAA 138 *** * * ** * * * * * * * * ** * ** * *** consensus_6152#0 GCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTT 657 consensus_6152#1 GCTGTCGAATGAGAATGGAAAAGTGACCAAATAAAGGTCTTATACTGGCACACTAGACTT 502 consensus_6152#2 GGTGGC--CTAAGTGTGTGTGTGTGTTTG--CAGTGGTAGTATGCAAGTGTG-TGAGCAC 193 * ** * * ** ** *** * *** *** * * * * consensus_6152#0 ATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGA-TAAGGA 716 consensus_6152#1 ATTAGCACCATGGAACCGACTTCCAGCCCTTGCCAAAGGGGGAATGATTCGGACTAAGGA 562 consensus_6152#2 ATAAGGAA-GTGAATATTACG--AAGCCCTTCTCATCCTAGCATGGGAGCCGTGTGAAGC 250 ** ** * ** * ** ******* ** * * * * * * * * consensus_6152#0 AGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAA 776 consensus_6152#1 AGTAAAAAAAAGCACTGCTTAAGCATCTATCTATTCTCTCCACGCAAACGTTTGACGAAA 622 consensus_6152#2 AGTGTGTGTGTGCGTTCAT--AGTAATTATCCAGTAGCGC-AAGTAGAGTTGCTAGCGGA 307 *** ** * * ** * **** * * * * * * * * * * * consensus_6152#0 CTGTGATTTTAGTTTTGGTTTTTTTTTTTTTGGTTTTAAGAGACAGTGCGTTTCTTTTAC 836 consensus_6152#1 CTGTGAT----------------------------------------------------- 629 consensus_6152#2 CTGCCGAACTACTACAG-----TACAAAGCCAAAACACGGCGATAGGATCCCTGGTCTAC 362 *** consensus_6152#0 TCCCACAAAAATCAAAACTGACTATTTGAAATTGATTGAAAGTGAACTGATGATAAAAAG 896 consensus_6152#1 ------------------------------------------------------------ consensus_6152#2 CTCTACAGTACAGCGCAGCGGC-ACATCACAGCCAT---AAACACAGCAGCCACAGAATG 418 consensus_6152#0 AGAACGAAAAAGAACTGCCCCATACTCACGCACCTGA 933 consensus_6152#1 ------------------------------------- consensus_6152#2 AGCAACGAACTGTCCTGCAAGGGAAGCCCACATCC-- 453 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||