These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 999 fasta sequence [GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCACACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTATATCCCCTCGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAAAACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCCTCGCTCCCTCCACCACAACGCAAAGATCTCTTATGTGAGCGCACCCGGCTATTATGATGATGTAGCGGAGGACGGGTCTCTTGTTGCGATAATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGGAAAAGGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAAGACTGCAGTCGATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGGTAGAGATCACCATTCAGGGGCTCAAGTACGACTCTCCCTCCACGCCTAGGGAAACGATCCTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCCTCTTTTTTTGGCACATTTGAAACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCGAAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA] [+] EMBL BX626436 [GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCACACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTATATCCCCTCGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAAAACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCCTCGCTCCCTCCACCACAACGCAAAGATCTCTTATGTGAGCGCACCCGGCTATTATGATGATGTAGCGGAGGACGGGTCTCTTGTTGCGATAATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGGAAAAGGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAAGACT ] [+] EMBL BM652549 [ ccgtgATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGG AAAGG AAGGAGCAGTAGTGTCTCTCA CCTTCCCCGACAGCTTGGTAAAGACTGCAGTCGATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGGTAGAGATCACCATTCAGGGGCTCAAGTACGACTCTCCCTCCACGCCTAGGGAAACGATCCTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCCTCTTTTTTTGGCACATTTGAAACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCGAAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA] consensusID : consensus_6154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence [GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGTAGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANAAGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAATTAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAATTTGGCAAAGGTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGGGGGCATTTNTGGACATTTCCGGGTCAGCAAAAACACGGGTTGGAATTCCGGCCGGGTTCGCAATTAATTTCAGGGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCAAGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGTCATCATGGGTCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCCCTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTGGAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACAGGGTTCCCANTCACGTTAAAAGCCNCGAACAACGACAGGGCAACAACAAATTTGGGCTATTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTATNAC] [+] EMBL AL696418 [GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGTAGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANAAGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAATTAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAATTTGGCAAAGGTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGGGGGCATTTNTGGACATTTCCGGGTCAGCAAAAACACGGGTTGGAATTCCGGCCGGGTTCGCAATTAATTTCAGGGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCAAGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGTCATCATGGGTCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCCCTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTGGAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACAGGGTTCCCANTCACGTTAAAAGCCNCGAACAACGACAGGGCAACAACAAATTTGGGCTATTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTATNAC] consensusID : consensus_6154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTTCCCTGTCTAAGCTAAACGTAGACTTTTGGGTGGCATTTAGCTGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTCTTTTTTAAGCTTAAACATTATTGAACTTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCCCCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACACACTGGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCTTTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGTTTGGGTTTTGCTTTAAATTAGGTTGTTGCCCTCCTGTTGGTACAAATCGTTTAAACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTGTGTGTATTTTTTAATGTAAAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA] [+] EMBL BM579881 [CCGCGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTTCCCTGTCTAAGCTAAACGTAGACTTTTGGGTGGCATTTAGCTGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTCTTTTTTAAGCTTAAACATTATTGAACTTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCCCCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACACACTGGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCTTTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGTTTGGGTTTTGCTTTAAATTAGGTTGTTGCCCTCCTGTTGGTACAAATCGTTTAAACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTGTGTGTATTTTTTAATGTAAAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA] consensusID : consensus_6154#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GCTCGTAGCGTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCTTGTTTCTTCCCCTCGTAGTCTGGTTGCCTAGAACGATAGGTAATGTGTTTTAGCTTGTCACGGTTTCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAATTACAAAAAAACGCTTGGGAACGGGGCTAATGGTTTTAACGACATGTGTAATTCTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATTGGAGGGCGTGTGTGTGTGTATGTGTCTTGTTCCACTGCAATTCAAACGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCTGTCTAAGTTAAACGTAGGCATTTGGGTGGCATTTAGCGGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTTTTTTTGTTAAGCTTAAACATTATTGAACTAAGAAGGCAAATGAGTGGCTTGTCTCTATCTACTGACGTTTGCTTTTCGCTCCCCGCGTCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC] [+] EMBL BX615848 [GCTCGTAGCGTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCTTGTTTCTTCCCCTCGTAGTCTGGTTGCCTAGAACGATAGGTAATGTGTTTTAGCTTGTCACGGTTTCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAATTACAAAAAAACGCTTGGGAACGGGGCTAATGGTTTTAACGACATGTGTAATTCTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATTGGAGGGCGTGTGTGTGTGTATGTGTCTTGTTCCACTGCAATTCAAACGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCTGTCTAAGTTAAACGTAGGCATTTGGGTGGCATTTAGCGGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTTTTTTTGTTAAGCTTAAACATTATTGAACTAAGAAGGCAAATGAGTGGCTTGTCTCTATCTACTGACGTTTGCTTTTCGCTCCCCGCGTCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6154#2 ------------------------------------------------------------ consensus_6154#3 ------------------------------------------------------------ consensus_6154#0 GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTA 60 consensus_6154#1 ------------------------------------------------------------ consensus_6154#2 ------------------------------------------------------------ consensus_6154#3 ------------------------------------------------------------ consensus_6154#0 TGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCA 120 consensus_6154#1 ------------------------------------------------------------ consensus_6154#2 ------------------------------------------------------------ consensus_6154#3 ------------------------------------------------------------ consensus_6154#0 CACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATC 180 consensus_6154#1 ------------------------------------------------------------ consensus_6154#2 ------------------------------------------------------------ consensus_6154#3 ------------------------------------------------------------ consensus_6154#0 TTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTAT 240 consensus_6154#1 ----------------------GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGT 38 consensus_6154#2 ----------------------------------------------------CCGCGAAC 8 consensus_6154#3 ------------------------------------------------------GCTCGT 6 consensus_6154#0 ATCCCCT-CGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAA 299 consensus_6154#1 AGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTG 98 consensus_6154#2 AATT-ACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTT-CCC 66 consensus_6154#3 AGC--GTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCT 64 consensus_6154#0 AACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCC 359 consensus_6154#1 GACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANA 158 * ** * * * consensus_6154#2 TGTCTAAGCTAAA---CGTAGACTTTTGGGTGGC----ATTTAGCTGAGATTAAAGTAAA 119 consensus_6154#3 TGTTTCTTCCCCT---CGTAGTCT----GGTTGC----CTAGAAC---GAT--AGGTAAT 108 consensus_6154#0 TCGCTCCCTCCAC---CACAACGCAA-AGATCTC----TTATGTGAGCGCACCCGGCTAT 411 consensus_6154#1 AGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAAT 218 * * * consensus_6154#2 GCACCCCTCGGTGTTAATTGC---TCGACTCTTTTTTAAGCTTAAAC---ATTATTGAAC 173 consensus_6154#3 GTGTTTTAGCTTGTCACGGTT---TCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAA 165 consensus_6154#0 TATGATGATGTAGCGGAGGAC---GGGTCTCTTGTTGCGATAATGATGATGATGATGATG 468 consensus_6154#1 TAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAAT----TTGGCAAAG 274 * * * * consensus_6154#2 TTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCC 233 consensus_6154#3 TTACAAAA-AAACGCTTGGGAACGGGGCT------AATGGTTTTAACGACATGTGTAATT 218 consensus_6154#0 ATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAA 528 consensus_6154#1 GTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGG 334 * ** * * consensus_6154#2 CCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACA-CACT 292 consensus_6154#3 CTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATT 278 consensus_6154#0 AGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGT-GCGGCGAAAAGGGAAAA 587 consensus_6154#1 GGGCATTTNTGGACATTTCCGGGTCAGCAAAAACA--CGGGTTGGAATTCCGGCCGGGTT 392 * * * consensus_6154#2 GGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCT 352 consensus_6154#3 GGAGG---GCGTGTGTGTGTGTATGTGTCTTGTTCCACT---GCAAT--TCAAACGAACA 330 consensus_6154#0 GGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAA--GACTGCAGTCG 645 consensus_6154#1 CGCAATTAATTTCAG-GGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCA 451 * * * * * * consensus_6154#2 TTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGT 412 consensus_6154#3 ATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCT--GT 388 consensus_6154#0 ATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGG 705 consensus_6154#1 AGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGT----CATCATGGG 507 * * * * consensus_6154#2 TTGGGTTTTGCTTT--AA-ATTAGGTTGTTGCC-CTCCTG---TTGGTACAAATCGTTTA 465 consensus_6154#3 CTAAGTTAAACGTA--GGCATTTGGGTGGCATT-TAGCGGAGATTAAAGTAAAGCACCCC 445 consensus_6154#0 TAGAGATCACCATTCAGGGGCTCAAGTACGACT-CTCCCTCCACGCCTAGGGAAACGATC 764 consensus_6154#1 TCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCC 567 * * * consensus_6154#2 AACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTG 525 consensus_6154#3 TCGGTGTTAATTGCTCGACTTTTTTTGT-TAAGCTTAAACATTATTGAACTAAGAAGGCA 504 consensus_6154#0 CTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCC 824 consensus_6154#1 CTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTG 627 * * * * consensus_6154#2 TATATGTAT-GTGTATTAGT-GTGTGTTTGTGTGTGTGTATTTTTT--------AATGTA 575 consensus_6154#3 AATGAGTG--GCTTGTCTCT-ATCTACTGACGTTTGCTTTTCGCTC--------CCCGCG 553 consensus_6154#0 TCTTTTTTTGGCACATTTGA-AACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCG 883 consensus_6154#1 GAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACA 687 * * consensus_6154#2 AAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAA 635 consensus_6154#3 TCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC---- 609 consensus_6154#0 AAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAA 943 consensus_6154#1 GGGTTCCCANTCACGTTAAAAGCCNCG-AACAACGACAGGGCAACAACAAATTTGGGCTA 746 * * * * consensus_6154#2 T--ATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA----------------- 676 consensus_6154#3 ------------------------------------------------------------ consensus_6154#0 TCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA---- 999 consensus_6154#1 TTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTA 806 consensus_6154#2 ---- consensus_6154#3 ---- consensus_6154#0 ---- consensus_6154#1 TNAC 810 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||