|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTTTGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGTGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTTTTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAGATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAGCGGT]
[+] EMBL BM620120 [GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTTTGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGTGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTTTTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAGATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAGCGGT]
consensusID : consensus_6161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[ACCCACGCGTCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTTGAACGGCTGGCGCCGGTATACGTCGATCGGTTGCGCACGTGTCTAGAGCAGGACTGCGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAACTCAGTTTCTACACGAGCCCGGGCGTGGATCTAAACTATGCGCTTGCTACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGCCGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT]
[+] EMBL BM624560 [ACCCACGCGTCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTTGAACGGCTGGCGCCGGTATACGTCGATCGGTTGCGCACGTGTCTAGAGCAGGACTGCGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAACTCAGTTTCTACACGAGCCCGGGCGTGGATCTAAACTATGCGCTTGCTACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGCCGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCGCATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT]
consensusID : consensus_6161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCGCTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCCACGGCAAGG]
[+] EMBL BM599676 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCGCTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCATCCACGGCAAGG]
[-] EMBL BX609982 [ AGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTGGAAAGGCTGGCGCCGGTGTACATCGATCGGTTGCGCGCGTGTCTTGAGCAGGACTGTGAGGCGGACGGTGGCTACCGGGTGCTGAACCACGGTGATCTGTGGTCGAACAATATGCTGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTTCGTCGATCTGCAAATCAGTTTCTACTCGAGCCCGGGCGTGGATCTAAACTATGTGCTTGCTACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGATCGAGCTGTAC ]
consensusID : consensus_6161#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[CCGCCCACGCGTCCGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGCGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTTTTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAAATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTCATCGATTGCTTTGACATTCATTTGCAGAAGAATAGAAAATAAGTCGAAATGGTCTTTTACTACAGAAACACTTCGTATACACAATGCAGTCATGAGCTACACCAAATAAAGTGTCATAATT]
[+] EMBL BM640311 [CCGCCCACGCGTCCGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTGAGATAGAAGCTCCGTCGCGGACAATATTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCTTTGTTTAGACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTTTTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAAATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAATACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTCATCGATTGCTTTGACATTCATTTGCAGAAGAATAGAAAATAAGTCGAAATGGTCTTTTACTACAGAAACACTTCGTATACACAATGCAGTCATGAGCTACACCAAATAAAGTGTCATAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6161#0 GACCCACGCGTCCGTCGAGCTGTACTACGCCTCGTTCCGGGACACGCTGGAGCAGCTGCA 60
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 ------------------------------------------------------------
consensus_6161#2 ------------------------------------------------------------
consensus_6161#0 GTACACGGCCCGGCCCATCCCGTCGCTCGCCGACGTACGGCGGGAGATAAGGCGGATGGA 120
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 ------------------------------------------------------------
consensus_6161#2 ------------------------------------------------------------
consensus_6161#0 ATTTTATGCCCTCGTGTCGGTCGTCTCCGTGCTGCCGATCGTGGTGATGGACCACACGGA 180
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 ------------------------------------------------------------
consensus_6161#2 ------------------------------------------------------------
consensus_6161#0 CGAGCTGGTGGCTAACTTTGAAAATCTCATCGACGGCAAGGATGCAGCGAGAGCGCGCGA 240
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 ------------------------------------------------------------
consensus_6161#2 -----------------------------------------CCGCGGACGCGTGGGCGGA 19
consensus_6161#0 CATACAGTACAATGGGGTGAACTATCAGCGCATCGTGCGTCCGATGCTGATTGAATTCAA 300
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 ---------------------------------------------------ACCCACGCG 9
consensus_6161#2 CGCGTGGGCGGTGAGGCGTCGGGACAGCTGCGTACCATCTTCGAGAAGGGGCTGGAAGCG 79
consensus_6161#0 TCAGCGCAAGATGCTAGACATTTAGACAGACAAGGGGAACCGGCGTTCTTTGGTTGCTTT 360
consensus_6161#3 -----------------------------------------------------CCGCCCA 7
consensus_6161#1 TCCGCGGACGCGTGGGGGGAGCGGTGGGACGGATTCGATCAAACGATCGTGCAAAAGCTT 69
consensus_6161#2 CTGATTGCCGTCGCCAGGGAGCGGTGGGACGGGTTCGATCAAACGATCGTGCAAAAGCTG 139
consensus_6161#0 TGTTGTCATGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTG---AGATAGAAGCTCCGT 417
consensus_6161#3 CGC-GTC-CGTGATAAGATCCCTTCAGCAGGTTGCAAAAGTG---AGATAGAAGCTCCGT 62
consensus_6161#1 GAACGGCTGGCGCCGGTATACGTCGATC-GGTTGCGCACGTGTCTAGAGCAGGACTGCGA 128
consensus_6161#2 GAAAGGCTGGCGCCGGTGTACATCGATC-GGTTGCGCGCGTGTCTTGAGCAGGACTGTGA 198
* * * * * * * * * ****** *** ** ** *
consensus_6161#0 CGTGGACAATA-TTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCT 476
consensus_6161#3 CGCGGACAATA-TTATCAATTTATAAGGTCCAAGGTCATTGATGGAGACATATAGTATCT 121
consensus_6161#1 GGCGGACGGTGGCTACCGGGTGCTGAA--CCACGGTGATC--TGTGGTCGAACAATATGC 184
consensus_6161#2 GGCGGACGGTGGCTACCGGGTGCTGAA--CCACGGTGATC--TGTGGTCGAACAATATGC 254
* **** * ** * * * * *** *** ** ** * * * * ***
consensus_6161#0 TTGTTTAG-ACGATACTGTGGAGTTTTCGGTGGTCAAAAGTGCCATATTATTGCAGTGTT 535
consensus_6161#3 TTGTTTAG-ACGATTCTGTGGAGTTTTCGGTGGTCAAAATTGCCATATTATTGCAGTGTT 180
consensus_6161#1 TGTTTCGCTACGATCCGACGGAACCGACGACCGTGCAGGATGTGGCGTT----CGTCGAT 240
consensus_6161#2 TGTTTCGCTACGATCCGACCGAACCGGCGACCGTGCAGGATGTGGCGTT----CGTCGAT 310
* ** ***** * ** ** ** * ** ** * * *
consensus_6161#0 TTGTTACATGATAACAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAG 595
consensus_6161#3 TTGTTACTTGATTGCAGTATTACTTGCTTTCATGCATCGCAACTGTCTTTTGTTCAGAAA 240
consensus_6161#1 CTGCAACTCAGTTTC-----TACACGAGCCCGGGCGT-GGATCTAAACTATGCGCTTGCT 294
consensus_6161#2 CTGCAAATCAGTTTC-----TACTCGAGCCCGGGCGT-GGATCTAAACTATGTGCTTGCT 364
** * * * *** * * ** * * * ** * ** *
consensus_6161#0 ATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAA 655
consensus_6161#3 ATTCCAGTGTTTCTCAAGTGATATCCACATTAGAAGGAAATATTGCAAATATCAGTAAAA 300
consensus_6161#1 ACCTGTCCGAACTACGAGACGCGGGCGCGGCTGGACGAGCTGAT-CGAGCTGTACTACGC 353
consensus_6161#2 ACCTGTCCGAACTACGACACGCGGGCGCGGCTGGACGAGCTGAT-CGAGCTGTACTACGC 423
* * * * * * * * ** * * * * * **
consensus_6161#0 TACGTTTCAGCGGT---------------------------------------------- 669
consensus_6161#3 TACGTTTCAACGGTATCTATGGTAACGCTAATGATCTGTC--ATCGATTGCTTTGA-CAT 357
consensus_6161#1 CTCGTTCCGGGACACGCTGGAGCAGCTCCAGTACACGGCCCGGCCCATCCCGTCACTCGC 413
consensus_6161#2 CTCGTTCCGGGACACGCTGGAGCAGCTGCAGTACACGGCCCGGCCCATCCCGTCGCTCGC 483
**** *
consensus_6161#0 ------------------------------------------------------------
consensus_6161#3 TCATTTGCAGAAGAATAGAAAATAAGTCGAAATG-GTCTTTTACTACAGAAACACTTCGT 416
consensus_6161#1 CGATGTACGGCGGGAGATAAGGCGGATGGAATTTTTTGCCCTCGTGTCGGTCGTCTCCGT 473
consensus_6161#2 CGACGTACGGCGGGAGATAAGGCGGATGGAAATTTATGCCCTCGTGTCGGTCGTCTCCGT 543
consensus_6161#0 ------------------------------------------------------------
consensus_6161#3 ATACACAAT-GCAGTCATGAGCTACACCAAATAA--AGTGTCATAATT------------ 461
consensus_6161#1 GCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCAT 533
consensus_6161#2 GCTGCCGATCGTGGTGATGGACCACACGGACGAGCTGGTGGCTAACTTTGAAAATCTCAT 603
consensus_6161#0 ------------------------------------------------------------
consensus_6161#3 ------------------------------------------------------------
consensus_6161#1 CGACGGCAAGGATGCAGCGAGAGCGCGCGACATACAGTACAATGGGGTGAACTATCAGCG 593
consensus_6161#2 CCACGGCAAGG------------------------------------------------- 614
consensus_6161#0 ---------------------------------------------
consensus_6161#3 ---------------------------------------------
consensus_6161#1 CATCGTTCGTCCGATGCTGATTGAATTCAATCAGCGCAAGATGCT 638
consensus_6161#2 ---------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||