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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1030 fasta sequence
[ACCAAAATTCCCCAATTTTACCGATAGAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTTGCAAAGTGCGTGTGATATTGTGTGTAAAAAGCCCCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTAGGAAAGGATCGGCGGGATAAGTTCTACAAGCTCGCCAAAGAGTCCGGGTACCGGTCGCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCAAGTATGTCTCGATCTGTGTGCCGCTCCCGGCGGTTGGATGCAGGTGGCGAAGCAGAACATGCCCGTCTCGAGCATCGTGATCGGTGTGGATCTGTACCCGATCAAGAACGTGCCGGGCTGTATCAGCCTGATCGGCGACATTACGAGCGACAAAACGAAGGCCGATCTGGCAAAGGAGCTGAAGACGTGGAAAGTGGACGTCGTGCTGAACGATGGTGCACCGAATGTGGGTAAAAACTGGCTGCACGATGCTTACCAGCAGGTCTGTCTGACGCTTAGCGCCGTCAAGCTGGCCACGCAGTTCTTGCGACCGGGCGGATGGTTCATCACTAAGGTGTTCCGCTCGAAGGACTACAACGCGCTGATCTGGGTGCTGAACCAGCTGTTCCGCAAGGTGCATGCGACCAAGCCGTCCGCTTCTCGTAAGGAGTCGGCCGAAATCTTCGTCGTCTGCCAGTACTACAAGGCGCCGGACAAGATTGATCCACGATTTTTGGACTCGAAGTATGTGTTCGAGGAGCTGGACATCCAGTCGAAGGACATTTCATCGAACAACATTCTGAAGGAATTGGAGCGCAAGACGCCCAAAAAACCGAAGGTGGAAGGTTACGACAGCACGGACGTGCGTAAGATTATAACCGCGCTGGAGTACATGCAGAGCGACAAGCCGCTGGCCCTGTTGAGTCGCGTGACAGAAATTACCTTCACCAAGGCGGATGAAGCAATTGCAAACCACCCGCGCACCACGACGGATCTGAAGGAATGCTG]
[+] EMBL BX622087 [ACCAAAATTCCCCAATTTTACCGATAGAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTTGCAAAGTGCGTGTGATATTGTGTGTAAAAAGCCCCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTAGGAAAGGATCGGCGGGATAAGTTCTACAAGCTCGCCAAAGAGTCCGGGTACCGGTCGCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCAAGTATGTCTCGATCTGTGTGCCGCTCCCGGCGGTTGGATGCAGGTGGCGAAGCAGAACATGCCCGTCTCGAGCATCGTGATCGGTGTGGATCTGTACCCGATCAAGAACGTGCCGGGCTGTATCAGCCTGATCGGCGACATTACGAGCGACAAAACGAAGGCCGATCTGGCAAAGGAGCTGAAGACGTGGAAAGTGGACGTCGTGCTGAACGATGGTGCACCGAATGTGGGTAAAAACTGGCTGCACGATGCTTACCAGCAGGTCTGTCTGACGCTTAGCGCCGTCAAGCTGGCCACGCAGTTCTTGCGACCGGGCGGATGGTTCAT ]
[+] EMBL BM618232 [ ACTGGCTGCACGATGCTTACCAGCAGGTCTGTTTGACGCTTAGCGCCGTCAAGCTGGCCACACAGTTCCTGCGCCCTGGCGGATGGTTCATCACTAAGGTGTTCCGCTCGAAGGACTACAACGCGCTGATCTGGGTGCTGAACCAGCTGTTCCGCAAGGTGCATGCGACCAAGCCGTCCGCTTCTCGTAAGGAGTCGGCCGAAATCTTCGTCGTCTGCCAGTACTACAAGGCGCCGGACAAGATTGATCCACGATTTTTGGACTCGAAGTATGTGTTCGAGGAGCTGGACATCCAGTCGAAGGACATTTCATCGAACAACATTCTGAAGGAATTGGAGCGCAAGACGCCCAAAAAACCGAAGGTGGAAGGTTACGACAGCACGGACGTGCGTAAGATTATAACCGCGCTGGAGTACATGCAGAGCGACAAGCCGCTGGCCCTGTTGAGTCGCGTGACAGAAATTACCTTCACCAAGGCGGATGAAGCAATTGCAAACCACCCGCGCACCACGACGGATCTGAAGGAATGCTG]
consensusID : consensus_6163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 900 fasta sequence
[CCGCCCACGCGTCCGGCGAGACGAAGGGTGATCTGTTCGAGGATGATAAGCTGCTTTCCCAGCGAGCCGATAGCGATTCTGAGATAGATTCCGACTTTGACGAGAAGGGCCTTGCGATGGAATCGGACGACGAGGAGCTGAGCTTCGAGGAGGACGAAGATATGAAGGATCCGTCGGACGATGAGGACCGCAATCCGCTGATCACGGATCTGGACTACCGTAGTAAGGTGGACAAGCGGCTGCACCGGGCACAGCTGTGGTACGAGCAGGAAGCGTTCAAAAAGCACAACCTCCAAGCGAACGACGAGGAGGTGGTGGATTACGATCTGGACAAGATGATCGAGGCGTACAAGAAGGCGGGCGTGACGGTGCTTGGTACGGAGGGCGCCGATAAAAGCAAGGAGTCGGAACCGCTGGGAAAGAAGGCCCGCCGCCGGTCCAAGCATGATGTGAACAAGCTGGACGGCGACGAGTCGAGCGATAGCAGCAGCTCGTCGGAAGATGAGGACGAACCACAGAACGCACAGGCAGTGGGCACGATGGTGCACAAGACGATAGAGAAGGTGGGTGGCGACAGCGAGGGCGGCTTCGAGATTGTGTCCTCCGAGAAGGTGCGCAAGCCGAAGAAGATCAAGCTGAGCGAGGAGGAGCTGGCGCTGGGAC-AATGATAATTTCGGGCAAGAAGACGCGCCGCGATATCATCGATGCGGCGTTCAATCGGTACATGTTTAACGATACCAACCTGCCGGACTGGTTCGTTGCGGACGAGCTGAAAACGATGCAGCGCCATCTGCCGGTGCCGGAAGATGTGGGTGGAGAAGTACCGCAAGTCGAAGGACGAGTTCAACGTGCGCACGATCAAGAAGGTGATGGAGGCGAAGGCGCGCAAGAAGCGGCACG]
[+] EMBL BM650220 [CCGCCCACGCGTCCGGCGAGACGAAGGGTGATCTGTTCGAGGATGATAAGCTGCTTTCCCAGCGAGCCGATAGCGATTCTGAGATAGATTCCGACTTTGACGAGAAGGGCCTTGCGATGGAATCGGACGACGAGGAGCTGAGCTTCGAGGAGGACGAAGATATGAAGGATCCGTCGGACGATGAGGACCGCAATCCGCTGATCACGGATCTGGACTACCGTAGTAAGGTGGACAAGCGGCTGCACCGGGCACAGCTGTGGTACGAGCAGGAAGCGTTCAAAAAGCACAACCTCCAAGCGAACGACGAGGAGGTGGTGGATTACGATCTGGACAAGATGATCGAGGCGTACAAGAAGGCGGGCGTGACGGTGCTTGGTACGGAGGGCGCCGATAAAAGCAAGGAGTCGGAACCGCTGGGAAAGAAGGCCCGCCGCCGGTCCAAGCATGATGTGAACAAGCTGGACGGCGACGAGTCGAGCGATAGCAGCAGCTCGTCGGAAGATGAGGACGAACCACAGAACGCACAGGCAGTGGGCACGATGGTGCACAAGACGATAGAGAAGGTGGGTGGCGACAGCGAGGGCGGCTTCGAGATTGTGTCCTCCGAGAAGGTGCGCAAGCCGAAGAAGATCAAGCTGAGCGAGGAGGAGCTGGCGCTGGGAC AATGATAATTTCGGGCAAGAAGACGCGCCGCG ]
[+] EMBL BM590705 [ ccgGGACTACCGTAGTAAGGTGGACAAGCGGCTGCACCGGGCACAGCTGTGGTACGAGCAGGAAGCGTTCAAAAAGCACAACCTCCAAGCGAACGACGAGGAGGTGGTGGATTACGATCTGGACAAGATGATCGAGGCGTACAAGAAGGCGGGCGTGACGGTGCTTGGTACGGAGGGCGCCGATAAAAGCAAGGAGTCGGAACCGCTGGGAAAGAAGGCCCGCCGCCGGTCCAAGCATGATGTGAACAAGCTGGACGGCGACGAGTCGAGCGATAGCAGCAGCTCGTCGGAAGATGAGGACGAACCACAGAACGCACAGGCAGTGGGCACGATGGTGCACAAGACGATAGAGAAGGTGGGTGGCGACAGCGAGGGCGGCTTCGAGATTGTGTCCTCCGAGAAGGTGCGCAAGCCGAAGAAGATCAAGCTGAGCGAGGAGGAGCTGGCGCTGGGACAAATGATAATTTCGGGCAAGAAGACGCGCCGCGATATCATCGATGCGGCGTTCAATCGGTACATGTTTAACGATACCAACCTGCCGGACTGGTTCGTTGCGGACGAGCTGAAAACGATGCAGCGCCATCTGCCGGTGCCGGAAGATGTGGGTGGAGAAGTACCGCAAGTCGAAGGACGAGTTCAACGTGCGCACGATCAAGAAGGTGATGGAGGCGAAGGCGCGCAAGAAGCGGCACG]
consensusID : consensus_6163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[GGTTTGTTGTCGATTGGAACAAGCGGCGACGACGACCAAAATTCCCCAATTTTACCGACAGAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTGGCAAAGTGCGTGTGATATTGTGTGTTAACAGCCTCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTAGGAAAGGATCGGCGGGATAAGTTCTACAAGCTCGCCAAAGAGTCCGGGTACCGGTCGCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCAAGTATGTCTCGATCTGCCGGTGCCGGAAGATGTGGTGGAGAAGTACCGCAAGTCGAAGGACGAGTTCAACGTGCGCACGATCAAGAAGGTGATGGAGGCGAAAGCG]
[+] EMBL BX606451 [GGTTTGTTGTCGATTGGAACAAGCGGCGACGACGACCAAAATTCCCCAATTTTACCGACAGAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTGGCAAAGTGCGTGTGATATTGTGTGTTAACAGCCTCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTAGGAAAGGATCGGCGGGATAAGTTCTACAAGCTCGCCAAAGAGTCCGGGTACCGGTCGCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCAAGTATGTCTCGATCTGCCGGTGCCGGAAGATGTGGTGGAGAAGTACCGCAAGTCGAAGGACGAGTTCAACGTGCGCACGATCAAGAAGGTGATGGAGGCGAAAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6163#0 ----------------------------------ACCAAAATTCCCCAATTTTACCGATA 26
consensus_6163#2 GGTTTGTTGTCGATTGGAACAAGCGGCGACGACGACCAAAATTCCCCAATTTTACCGACA 60
consensus_6163#1 --------------CCGCCCACGCGTCCGGCGAGACGAAGGGTGATCTGTTCGAG-GATG 45
** ** * * ** * **
consensus_6163#0 GAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTTGCAAAGTGCGTGTG 86
consensus_6163#2 GAAAGGTAAAAAGTGTGCAAAGTTGCTTGTGTTACTTTCTTCTGTGGCAAAGTGCGTGTG 120
consensus_6163#1 ATAAGCTGCTTTCCCAGCGA-GCCGATAGCGATTCTGAGATAGATTCCGACTTTGACGAG 104
*** * ** * * * * * * * ** * * * * * * *
consensus_6163#0 ATATTGTGTGTAAAAAGCCCCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTA 146
consensus_6163#2 ATATTGTGTGTTAACAGCCTCATTTAAGCGCTCACAACAATGGGTAAAAAGGCAAAAGTA 180
consensus_6163#1 AAGGGCCTTGCGATGGAATCGGACGACGAGGAGCTGAGCTTCG--AGGAGGACGAAGATA 162
* ** * * * * * * * * * * * ** **
consensus_6163#0 GGAAAGGATCGGCGG--GATAAGTTCTACAAGCT--CGCCAAAGAGTCCGGGTACCGGTC 202
consensus_6163#2 GGAAAGGATCGGCGG--GATAAGTTCTACAAGCT--CGCCAAAGAGTCCGGGTACCGGTC 236
consensus_6163#1 TGAAGGATCCGTCGGACGATGAGGACCGCAATCCGCTGATCACGGATCTGGACTACCGTA 222
*** * ** *** *** ** * *** * * * * ** ** * **
consensus_6163#0 GCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCA 262
consensus_6163#2 GCGTGCCGCATTCAAGTTGATTCAGCTGAACCGACGCTTCGGATTCTTGCAGCAGTCGCA 296
consensus_6163#1 GTAAGGTGGA--CAAGCGGCTGCA-CCGGGC--ACAGCTGTGGTACGAGCAGGAAGCGTT 277
* * * * **** * * ** * * * ** * * * * **** * **
consensus_6163#0 AGTATGTCTCGATCTGTGTGCCGCTCCCG-GCGGTTGGATGCAGGTGGCGAA--GCAGAA 319
consensus_6163#2 AGTATGTCTCGATCT----GCCGGTGCCG-GAAGATGT-----GGTGGAGAA--GTACCG 344
consensus_6163#1 CAAAAAGCACAACCTCCAAGCGAACGACGAGGAGGTGG---TGGATTACGATCTGGACAA 334
* * * * ** ** ** * * ** * * ** * *
consensus_6163#0 CATGCCCGTCTCGAGCATCGTGATCGGTGTGGATCTGTACCCGATCAAGAACGTGCCGGG 379
consensus_6163#2 CAAG------TCGAAGGACGAGTTCAACGTG------CGCACGATCAAGAAGGTGATGGA 392
consensus_6163#1 GATGATCGAGGCGTACAAGAAGGCGGGCGTGA--CGGTGCTTGGTACGGAGGGCGCCG-- 390
* * ** * *** * * * ** * * *
consensus_6163#0 CTGTATCAGCCTGATCGGCGACATTACGAGCGACAAAACGAAGGCCGATCTGGCAAAGGA 439
consensus_6163#2 G-GCGAAAGCG------------------------------------------------- 402
consensus_6163#1 --ATAAAAGCAAGGAGTCGGAACCGCTGGGAAAGAAGGCCCGCCGCCGGTCCAAGCATGA 448
***
consensus_6163#0 GCTGAAGACGTGGAAAGTGGACGTCGTGCTGAACGATGGTGCACCGAATGTGGGTAAAAA 499
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 TGTGAACAAGCTGGACGGCGACGAGTCGAGCGATAGCAGCAGCTCGTCGGAAGATGAGGA 508
consensus_6163#0 CTGGCTGCACGATGCTTACCAGCAGGTCTGTCTGACGCTTAGCGCCGTCAAGCTGGCCAC 559
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 CGAACCACAGAACGCACAGGCAGTGGGCACGATGGTGCACAAGACGATAGAGAAGGTGGG 568
consensus_6163#0 GCAGTTCTTGCGACCGGGCGGATGGTTCATCACTAAGGTGTTCCGCTCGAAGGACTACAA 619
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 -------TGGCGACAGCGAGGGCGGCT--TCGAGATTGTGTCCTCCGAGAAGGTGCGCAA 619
consensus_6163#0 CGCGCTGATCTGGGTGCTGAACCAGCTGTTCCGCAAGGTGCATGCGACCAAGCCGTCCGC 679
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 GCCGAAGAAGATCAAGCTGAGCGAGGAGGAGCTGGCGCTGGG-ACAATGATAATTTCGGG 678
consensus_6163#0 TTCTCGTAAGGAGTCGGCCGAAATCTTCGTCGTCTGCCAGTACTACAAGGCGCCGGACAA 739
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 CAAGAAGACGCGCCGCGATATCATCGATGCGGCGTTCAATCGGTACATGTTTAACGATAC 738
consensus_6163#0 GATTGATCCACGATTTTTGGACTCGAAGTATGTGTTCGAGGAGCTGGACATCCAGTCGAA 799
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 CAACCTGCCGGACTGGTTCGTTGCGGACGAGCTGAAAACGATGCAGCGCCATCTGCCGGT 798
consensus_6163#0 GGACATTTCATCGAACAACATTCTGAAGGAATTGGAGCGCAAGACGCCCAAAAAACCGAA 859
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 GCCGGAAGATGTGGGTGGAGAAGTACCGCAAGTCGAAGGACGAGTTCAACGTGCGCACGA 858
consensus_6163#0 GGTGGAAGGTTACGACAGCACGGACGTGCGTAAGATTATAACCGCGCTGGAGTACATGCA 919
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 TCAAGAAGGTGATGGAGGCGAAGGCGCGCAAGAAGCGGCACG------------------ 900
consensus_6163#0 GAGCGACAAGCCGCTGGCCCTGTTGAGTCGCGTGACAGAAATTACCTTCACCAAGGCGGA 979
consensus_6163#2 ------------------------------------------------------------
consensus_6163#1 ------------------------------------------------------------
consensus_6163#0 TGAAGCAATTGCAAACCACCCGCGCACCACGACGGATCTGAAGGAATGCTG 1030
consensus_6163#2 ---------------------------------------------------
consensus_6163#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||