These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence [CCGAACAAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCGCATCGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGTGTGTGTGTGTGTGTGTTTGTGTTCTTTAGCGCTTTAGCAGCGTGTTGTGTTTCCTCATGCCAGTGCGGCGCATCCAGTAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAGGAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGGTCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGCGGAGGGCCACGAGCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGG-ATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGAGGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTGCACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCTGCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCTCATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGATGCGCGAC] [+] EMBL BM607480 [CCGAACAAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCGCATCGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGTGTGTGTGTGTGTGTGTTTGTGTTCTTTAGCGCTTTAGCAGCGTGTTGTGTTTCCTCATGCCAGTGCGGCGCATCCAGTAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAGGAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGGTCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGCGGAGGGCCACGAGCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGG ATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAG ] [+] EMBL BM614050 [ ccGGCCACGAGCTGGTCGCGCTGGCCAACCTGCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGGTATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGAGGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTGCACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCTGCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCTCATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGATGCGCGAC] consensusID : consensus_6168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [AAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCACATCGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGTCCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAAATAGCAGCTCTTGCGTCGGACCGCGCTCTGACCGCGACACGCCCGGGGAGCAAAACTGGGCGGAAGGGGTGAGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT] [+] EMBL BX617686 [AAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCACATCGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGTCCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAAATAGCAGCTCTTGCGTCGGACCGCGCTCTGACCGCGACACGCCCGGGGAGCAAAACTGGGCGGAAGGGGTGAGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT] consensusID : consensus_6168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTCCTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGCCCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGCCCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGG] [+] EMBL BX625178 [ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTCCTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGCCCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGCCCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGG] consensusID : consensus_6168#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTTCTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGCCCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGTGTGTGACAAAAGCGCCACCGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTTCCACCCTTCATCGCTCATCCCCAGCCCATCGACGGCCGTGCGCTCGTCTCTTCGTCGCGAGCGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCGGTCAGCGTATTAGAGGGCCCCCGAC] [+] EMBL BX622790 [ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTTCTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGCCCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGTGTGTGACAAAAGCGCCACCGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTTCCACCCTTCATCGCTCATCCCCAGCCCATCGACGGCCGTGCGCTCGTCTCTTCGTCGCGAGCGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCGGTCAGCGTATTAGAGGGCCCCCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6168#2 ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTG 60 consensus_6168#3 --------------ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTG 46 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 ------------------------------------------------------------ consensus_6168#2 ATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTC 120 consensus_6168#3 ATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTT 106 consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 ------------------------------------------------------------ consensus_6168#2 CTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGC 180 consensus_6168#3 CTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGC 166 consensus_6168#1 ---------------------------------AAAACACAAGCCCGTC--ACAAACAGC 25 consensus_6168#0 ---------------------------CCGAACAAAACACAAGCCCGTC--ACAAACAGC 31 * *** ***** ** ** ** consensus_6168#2 CCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGC 240 consensus_6168#3 CCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAA-CGTGC 225 consensus_6168#1 TGTT------GGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACA---CTTGA 76 consensus_6168#0 TGTT------GGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACA---CTTGA 82 * ** * * * * *** * * ** * * * ** consensus_6168#2 TCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAAC 300 consensus_6168#3 TCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAAC 285 consensus_6168#1 CCGCGTTAATACACCCCGCCGTTACCGTGACGAC----AGCGAGCGCCGTACCATCACAT 132 consensus_6168#0 CCGCGTTAATACACCCCGCCGTTACCGTGACGAC----AGCGAGCGCCGTACCATCGCAT 138 * * * * * * * * * ** * * * consensus_6168#2 TCAGCCATGCGGTTAGAAC-ACTGACCGCGACAGTGTATGT-GTGTGTGTTTGTGTGCGC 358 consensus_6168#3 TCAGCCATGCGGTTAGAAC-ACTGACCGCGACAGTGTATGT-GTGTGTGTTTGTGTGCGC 343 consensus_6168#1 CGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGC 192 consensus_6168#0 CGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGT-GTGTGTGTGTGTGTGTTT 197 * *** * * * ** * * * ** ******** ****** consensus_6168#2 GAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGC 418 consensus_6168#3 GAGTGTGCGTGTGTGTGTGTGT-----GTGTGACAAAAGCGCCACCGCCGCCGCCGCTGT 398 consensus_6168#1 GAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGT 252 consensus_6168#0 GTGTTCTTTAGCGCTTTAGCAGC----GTGTTGTGTT-TCCTCATGCCAGTGCGGCGCAT 252 * ** * * * * *** * * * consensus_6168#2 CCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTC-GTGCCAGTT 477 consensus_6168#3 GTGGTTA--GTGAT---AGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTT 453 consensus_6168#1 CCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTC-GTGCCAGTT 311 consensus_6168#0 CCAG-TAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAG 311 * ** * * ** * consensus_6168#2 GTGCGGGCTGTGTAGTGGACGGG---CACGACGACTGTC---TCTGTGCGGTACCGATAT 531 consensus_6168#3 CCACC--CTTCATCGCTCATCCC---CAGCCCATCGACG---GCCGTGCG---CTCGTCT 502 consensus_6168#1 GTGCGGGCTGTGTAGTGGACGGG---CACGACGACTGTC---TCTGTGCGGTACCGATAT 365 consensus_6168#0 GAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGG 371 * * * * * * * * * * consensus_6168#2 TT--TTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGA-GATCTCGAGTAGTGTGG 588 consensus_6168#3 CT--TCGTCGCGAG---CGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCG 557 consensus_6168#1 TT--TTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGA-GATCTCGAGTAGTGTGG 422 consensus_6168#0 TCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGC--GGAGGGCCACGA 429 * * * * * * * * * consensus_6168#2 GATGCTGTGGTGCGCGGATCGCCGCACGGAAGAA------GAAAGGGATACGATCGCGCT 642 consensus_6168#3 GTCAGCGTATTAGAGGGCCCCCGAC----------------------------------- 582 consensus_6168#1 GATGCTGTGGTGCGCGGATCGCCGCACGGAAGAA------GAAAGGGATACGATCGCGCT 476 consensus_6168#0 GCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTA 489 * * * consensus_6168#2 CTAGACGCTGA-CAA--AAGAGTTTGCCCACGCACAACGG-------------------- 679 consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 CTAGACGCTGA-CAA--AAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAA-ATA 532 consensus_6168#0 CCAGACGGTGGGCCACCAGGGGATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTA 549 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 GCAGCTCTTG-CGTCGGACCGCGCTCTGACCGCGACACGCC-CGGGGAGCAAAACTGGGC 590 consensus_6168#0 CCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGA 609 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 GGAAGGGGTG-AGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGC-TGTGTG 648 consensus_6168#0 CGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGA 669 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 GTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT---------- 698 consensus_6168#0 GGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTG 729 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 CACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCT 789 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 GCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCT 849 consensus_6168#2 ------------------------------------------------------------ consensus_6168#3 ------------------------------------------------------------ consensus_6168#1 ------------------------------------------------------------ consensus_6168#0 CATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGAT 909 consensus_6168#2 ------- consensus_6168#3 ------- consensus_6168#1 ------- consensus_6168#0 GCGCGAC 916 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||