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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6169#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1194 fasta sequence
[AGAGAAAACAAAAGGTAAAAACACATCATATCGACGAGGTGATGTTCTTCGGTCCGACCATACTGGAGCTGCGGCGCCGCCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGACTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG-AAAGCGCGGCGC-CTG-TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTGCTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCGGGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTTAAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG]
[+] EMBL CNS09I36 [AGAGAAAACAAAAGGTAAAAACACATCATATCGACGAGGTGATGTTCTTCGGTCCGACCATACTGGAGCTGCGGCGCCGCCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGACTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAGCGCGGCGC CTGTTGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATT ]
[+] EMBL CNS09NWV [ TGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCATGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAGCGCGGCGC GTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGAAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGACAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGT ]
[-] EMBL CNS09I37 [ CATGATACCGAACAATTGTAAAAAATTAACATTAGAAACGGTGAATTTGTGCCGAAAGTATTTGTCGATATTTGTTCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGGAAAAGC CGGCGCGCTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTTACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATAACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTGCTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCGGGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTTAAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG]
[-] EMBL CNS09NWW [ TGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATTTGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCTGG AAAAGGCGGCGCGCTG TGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTTTCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAACAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACAGGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCCATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACATCCACCCAGAACGAATGAAAGCGACGAAGAACAAGAACACGTTCCTAGGATCCAAATAATGCTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATAAGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGACAGAATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTTGAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAATGATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAG ]
consensusID : consensus_6169#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTATGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACACATTTGCAGGACGATCCGACCGCGGAATGGAGGGCGGTCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCATTTACTACGCGACCGCTTCGCTGTGTC]
[+] EMBL BX613040 [GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTATGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACACATTTGCAGGACGATCCGACCGCGGAATGGAGGGCGGTCACGATTGCGAACCAGCTGCTCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCAGCGGCCATCCGAACCATAGTGCATTTACTACGCGACCGCTTCGCTGTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6169#0 ------------------------------------AGAGAAAACAAAAGGTAAAAAC-A 23
consensus_6169#1 GTGCTGTGCCTGTCCGAGGGCAATCACGACCGTAAGGGTGCGGTGCGGAGGCAGGAGCTA 60
* * *** * * * *
consensus_6169#0 CATCATATCGACGAGGTGATGTTCTT-CGGTCCGACCATACTGGA---GCTGCGGCGCCG 79
consensus_6169#1 TGGGATGCGTGCGAAAGCATGGGCGTGCGGCCCGAGGACATAACACTCGTTAATGCGACA 120
** *** *** * * *** **** * * * * * *** *
consensus_6169#0 CCAGTGCCGCGTGTTTGTGCTGTGCCTGTCCGAGGGCAATCACGATTGCGAACCAGCTGC 139
consensus_6169#1 CATTTGCAGGACGATCCGACCGCGG--AATGGAGGGCGGTCACGATTGCGAACCAGCTGC 178
* *** * * * * * * ****** *********************
consensus_6169#0 TCCGCCAGCTGGAATCGCTCGACGCGGA-CTGCTGATCACGTTCGACAAGGAAGGTATCA 198
consensus_6169#1 TCCGCCAGCTGGAATCGCTCGACGCGGAGCTGCTGATCACGTTCGACAAGGAAGGTATCA 238
**************************** *******************************
consensus_6169#0 GCGGCCATCCGAACCATAGTGCAATTTACTACGCGACCGCTTCGCTGTGTCTTTCCGGCA 258
consensus_6169#1 GCGGCCATCCGAACCATAGTGCA-TTTACTACGCGACCGCTTCGCTGTGTC--------- 288
*********************** ***************************
consensus_6169#0 TGATACCGAACAATTGTAAAGTATTAACATTAGAAACGGTGAATCTGTGCCGAAAGTATT 318
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 TGTCGATATTTGATCTGCCGGCGACGCTGCTGCTATCTACCAATTGGGTCATCCTCAGCT 378
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 GGAAAGCGCGGCGCCTGTGCAGAATGCGATGCGCTTGCACAACTCCCAGATGGTGTGGTT 438
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 TCGCAAGCTGTACATAATATTCTCCCGCTACATGGTGATCAATTCGTTGCGCGAAATTAA 498
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 CAAATCCGACGTAGAGTTTGAAATTTTGGATACCTAAGTGGCGTGACAGACGCGCAAACA 558
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 GGTTGCGAGCGCCAACCAAAACAAAACTGTGCACCGAAACAGCTTCCAGATGCTTCTTCC 618
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 ATCAGCTGGGACCACCAAATCACGCACTCCGTCTTGTAGTAAACACCCACAAGAGCACAT 678
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 CCACCCAGAACGAATGAAAGCGACGGAGAACAAGAACACGTTCCTAGGATCCAAATAATG 738
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 CTAACTGATAAGTACGATGCGCTTTCACTAGTCTTCAACTTTATGTTGTTTTACCCAATA 798
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 AGTAGTTGAATGCAAGAATTTATTCAATAGCCCGAGAGATAGAGGTATCGGTGAGGCAGA 858
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 ATCGTGGCCAGTCGGACAAAATCTGTCCGTATGTGAAGTTATGAAGAGCATTTTTGAGTT 918
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 GAACTCTGTATGTTGAGCTTTGCGGTATTGGATTCAAATTGTTTGAATATTGTTCAAAAT 978
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 GATATTGGTTGAGAAGCTGATGAAAAGGTTGAAATTGTTGTATGTGTAGAGAAAAATTTG 1038
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 CTCTAGCTCTAGTCCTTTCCTTCCATTCGCGTAGGTTCTGTAAATAGATCGCTTTCTTCG 1098
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 GGGAGCAGTCGCCTTTCCTAATGTTTTAGTTTTTTTCTCTCTCTTCTGTTGCTTAAATTT 1158
consensus_6169#1 ------------------------------------------------------------
consensus_6169#0 AAAACTAAAACCTTTATGAACTTTTGGAAAATAAAG 1194
consensus_6169#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||