These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence [CGCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGCTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATTATTGGACAAATAG] [+] EMBL BX621141 [CGCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGCTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTAT ] [+] EMBL BX623400 [ CGGCGGCTTANTCGGGAGGCAAAAGGGACACTTGCAAAGGAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAAAAGGTATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATA ] [+] EMBL BM583950 [ ccgGGTATCTCCATTCGAAGGTATCTTTTTTCTTGTATGTGAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGC ] [+] EMBL BX616064 [ TTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAATGTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAGGTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTCCCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGTATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGTTGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAGAAAACCACAATATCCATTTTCTTACTAGGTTTTCCAGGGGTTCTCATAGCTGTGGGATACTTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATTATTGGACAAATAG] consensusID : consensus_6170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCGCCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCAAATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTAATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGCACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAGCAAAAGGGACACTTGCAAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGTTATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGTGAATGTGTGCGTGTCATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC] [+] EMBL BM584153 [CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCGCCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCAAATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTAATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGCACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAGCAAAAGGGACACTTGCAAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCGGAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGTTATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAGCAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTAACATCCCATTTCAACTTTGTCAATTGTGTGTGTGTGAATGTGTGCGTGTCATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATGAAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6170#0 ------------------------------------------------------------ consensus_6170#1 CCGGGGGGCGGCGGCAGCGGTGGCGGAGGCAACAGCTCGTCCAAGTCGTCCTCTCCCTCG 60 consensus_6170#0 ------------------------------------------------------------ consensus_6170#1 CCGGCTTCTTCATCATCGTCGTGCGCCTCTCCATCGCCGCCCGCGTCGCCTATCGAGTCA 120 consensus_6170#0 ------------------------------------------------------------ consensus_6170#1 AATATCAATATTAATGGTAATGGTAGTATTTGTTGAAAAAAGTAGCACGAGAAAGCAGTA 180 consensus_6170#0 -----------------------------------------------------------C 1 consensus_6170#1 ATGAGGTAATTCGAGGAGGGGGAGAAATGGGCACTGCAGGGTTTGCTCTTCAACTGGAGC 240 * consensus_6170#0 GCGACACATTGCACATCCAAGCAGGCGGCGGCTTAATCGGGAGGCAAAAGGGACACTTGC 61 consensus_6170#1 ACGACACAATGCACATCCAAGCAGGCGGCGGCTTAAGCGGGAG-CAAAAGGGACACTTGC 299 ******* *************************** ****** **************** consensus_6170#0 AAAGGAAA-TTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCG 120 consensus_6170#1 AAAGGAAAATTTCAAAACCATTCTCCCAAACCGTACCAAAAACAGCAGAACACAGGATCG 359 ******** *************************************************** consensus_6170#0 GAAAGAGCACATCGAGCAAGTACTGTATAACACACATAGAAGAAAA---------AAGGT 171 consensus_6170#1 GAAAGAGCACATCGAGCAAGTACTGTATAACAAACACACACGAAAAGATGTTACAAAAGT 419 ******************************** *** * * ***** ** ** consensus_6170#0 ATCTCCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAG 231 consensus_6170#1 TATACCATTCGAAGGTATCTCTTTTTAGGTCGTTTAAAGGCGGCATCCTGTTTAGATTAG 479 ******************************************************** consensus_6170#0 CAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTA 291 consensus_6170#1 CAGAAGGTACGGGAGAGTTCGCGCACGCAGCCAGCCAGCACACAGCCTCATCAACCCGTA 539 ************************************************************ consensus_6170#0 ACATCCCATTTCAACTTTGTCAATTGTGTGTGTGAATGTGTGTGTGTGCGTGTGTTGAAT 351 consensus_6170#1 ACATCCCATTTCAACTTTGTCAATTGTGTGTGTG----TGAATGTGTGCGTGT------- 588 ********************************** ** *********** consensus_6170#0 GTCATCCGAGGTATAGCACCCATGCTGAGACTAATACGAGTTACCATTGCAATGCGGTTG 411 consensus_6170#1 --CATCCGAGGTGTAGCACCCATGCTCAGACTAATTCGAGTTACCATTGCAATGAGGATG 646 ********** ************* ******** ****************** ** ** consensus_6170#0 AAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCCCCGCGCCAATGGAAG 471 consensus_6170#1 AAATATAAGCTGAAGTGAGGCTGGCGAGCTAGTTCTAAAAAGCCC--------------- 691 ********************************************* consensus_6170#0 GTTTAGTAGTTTGCTTGGATGATGTAGCCCGTTTAAAAGTGTGTAGCCGCATCACTTCTC 531 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CCTCCCTTGACGAGATTAGTGTCTATGTGTGCGTGTGTGTGAGAGAGAGAGAAGGAGTGT 591 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 ATGCTCCTGTTGCGTTGTTGCTGGGTTGTGTCAAAATAGCAACACACACTCTGGTCGGGT 651 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TGCTGCAACTGAAGAAAAAAATGGCAAAGCAGCGCAATTATTCTATATCAGTAACATTAG 711 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AAAACCACNATATCCATTTTCTTACTAGGGTTTCCAGGAGTTCTCATAGCTGNGGGATGC 771 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TTTATTGACTCTTTCATACGTGAACTTAATGTAGTGGGAATTGGATTCTATAGTACCATT 831 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 ATTGGACAAATAG 844 consensus_6170#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||