cluster # 6175

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Anopheles gambiae
cluster # 6175 cluster # 6175 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6175#0 length = 920 sequences # 4

consensus_6175#1 length = 563 sequences # 1

consensusID : consensus_6175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 920
fasta sequence

                              [CCGCCACCATGCAACAACCCGCAGCCGCCGATGAATCGTTCATCGTTCGTGGCCCTCCAGCACCGGCTGATCTTACGCTAGGTGCCCATTCACTCGGTCAACTGTTTCTCAACGTTTTGCAGAAAACTCCACACAGCGTTGCGCTTGTAGATGGAGTTACGGGTAGGGAGTATTCGTATCATGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAACGCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGATACGAGTACCCGGTCACGGTGATTGCCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAACTGGTGCATGCCCTAAATGTGGCCCGTCCGAAGCTTGTGTTTGTTTCATCGTTAGCGAGAGGATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCCTACGATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCACAGTCGCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCATGTCTTCCGGTACGACAGGCCTACCGAAGGGTGTACTCATCACACACCGGAACGTTATGGCTACGATGGCTAACGTGCGGGATGCACTGGACAAGGGACTGTCACTGCACTGCAGTCTCGATGTGCTACCCTGGTTCCATGTAGCCGGTGGTATCTCCATGCTCAGCTGGCTAGGTGCTAATCTCACCGTGGTGTATCTGCCCCGGTTCGAGCCACGGACCTACCTTCGCTGTATCGAGCGGTACCGTCCAAGCTTCCTCAACATGGTGCCCCCAATCGTGGTCNTTCTGGCGAAGCATCCNGCCGTGCTCGAGTATGAT]

[+] EMBL BM655855             [CCGCCACCATGCAACAACCCGCAGCCGCCGATGAATCGTTCATCGTTCGTGGCCCTCCAGCACCGGCTGATCTTACGCTAGGTGCCCATTCACTCGGTCAACTGTTTCTCAACGTTTTGCAGAAAACTCCACACAGCGTTGCGCTTGTAGATGGAGTTACGGGTAGGGAGTATTCGTATCATGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAACGCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGATACGAGTACCCGGTCACGGTGATTGCCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAACTGGTGCATGCCCTAAATGTGGCCCGTCCGAAGCTTGTGTTTGTTTCATCGTTAGCAAGAGGATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCCTACGATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCACAGTCGCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCATGTCTTCCGGTACGACAGGCCTACCGAAGGGTGTACTCATCACACACCGG                                                                                                                                                                                                                                                                              ]
[+] EMBL BX602054             [           CAACAACCCGCAGCCGCCGATGAATCGTTCATCGTTCGTGGCCCTCCAGCACCGGCTGATCTTACGCTAGGTGCCCATTCACTCGGTCAACTGTTTCTCAAAGTTTTGCAGAAAACTCCACACAGCGTTGCGCTTGTAGATGGAGTTACGGGTAGGGAGTATTCGTATCAAGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAACGCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGGTACGAGTACCCGGTCACGGTGATTGCCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAACTGGTGCATGCCCTAAATGTTGCCCGTCCGAAACTTGTGTTTGTTTCATCGTTAGCGAGAGGATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCCTACGATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCACAGTCGCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCATGTCTTCCGGTACGACAGGCCTACCGAAGGGTGTACTCATCACGCACCGGAACGTTATGGCTACGATGGCTAACGTGCGGGATG                                                                                                                                                                                                                                            ]
[+] EMBL BM581813             [                                                                                                                                                                    ccGGAGTATTTGTATCATGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAACGCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGATACGAGTACCCGGTCACGGTGATTGCCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAACTGGTGCATGCCCTAAATGTGGCCCGTCCGAAGCTTGTGTTTGTTTCATCGTTAGCGAGAGGATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCCTACGATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCACAGTCCCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCATGTCTTCCGGTACGACAGGTCTACCGAAGGGTGTACTCATCACACACCGGAACGTTATGGCTACGATGGCTAACGTGCGGGATGCACTGGACAAGGGACTGTCACTGCACTGCAGTCTCGATGTGCTACCCTGGTTCCATGTAGCCGGTGGTATCTCCATGCTCAGCTGGCTAGGTGCTAATCTCACCGTGGTGTATCTGCCCCGGTTCGAGCCACGGACCTACCTTCGCTGTATCGAGCG                                                                               ]
[+] EMBL BX624261             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCGCTGTTAAACGTTATCTCCTACGATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCACAGTCGCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCATGTCTTCCGGTACGACAGGCCTACCGAAGGGTGTACTCATCACGCACCGGAACGTTATGGCTACGATGGCTAACGTGCGGGATGCACTGGACAAGGGACTGTCACTGCACTGCAGTCTCGATGTGCTACCCTGGTTCCATGTAGCCGGTGGTATCTCCATGCTCAGCTGGCTAGGTGCTAATCTCACCGTGGTGTATCTGCCCCGGTTCGAGCCACGGACCTACCTTCGCTGTATCGAGCGGTACCGTCCAAGCTTCCTCAACATGGTGCCCCCAATCGTGGTCNTTCTGGCGAAGCATCCNGCCGTGCTCGAGTATGAT]




>consensus_6175#0
CCGCCACCATGCAACAACCCGCAGCCGCCGATGAATCGTTCATCGTTCGTGGCCCTCCAG
CACCGGCTGATCTTACGCTAGGTGCCCATTCACTCGGTCAACTGTTTCTCAACGTTTTGC
AGAAAACTCCACACAGCGTTGCGCTTGTAGATGGAGTTACGGGTAGGGAGTATTCGTATC
ATGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAAC
GCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGATACGAGTACCCGGTCACGGTGATTG
CCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAAC
TGGTGCATGCCCTAAATGTGGCCCGTCCGAAGCTTGTGTTTGTTTCATCGTTAGCGAGAG
GATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCCTACG
ATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAAGCAAACGGTTCA
CAGTCGCGTCTATTCAGCCCATGTCGGTAGAGATAGCCGAGGAAGTGGCAATCATCGTCA
TGTCTTCCGGTACGACAGGCCTACCGAAGGGTGTACTCATCACACACCGGAACGTTATGG
CTACGATGGCTAACGTGCGGGATGCACTGGACAAGGGACTGTCACTGCACTGCAGTCTCG
ATGTGCTACCCTGGTTCCATGTAGCCGGTGGTATCTCCATGCTCAGCTGGCTAGGTGCTA
ATCTCACCGTGGTGTATCTGCCCCGGTTCGAGCCACGGACCTACCTTCGCTGTATCGAGC
GGTACCGTCCAAGCTTCCTCAACATGGTGCCCCCAATCGTGGTCNTTCTGGCGAAGCATC
CNGCCGTGCTCGAGTATGAT

consensusID : consensus_6175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [AGAATCGCCCGAGGTTANCAACAGCGCTGTTAACGTTATATCCCTACGATGCACTCGAACGCGGGACAGCTTTGCGCACTGTTTACAGCGATCAAAGCAAACGGGTCACAGTCGCGTCTATTCAGCCCTTGGTCGGTAGAGAATATNCCGAGGAAGCTGNGNAAATCATCGGTCATGTCCTCTCGGGTACGACAGGNCTACCGAAGGGTNGTACTCCATTCAACAACACCGGGAACGGTTATTGGCGTACGAATTGTGCTTAAACGTTGCGGGGGATTTGCCACTTGGGACAAGGGGGACTTGTCCACTTGTGCCACCTGGNCAAGTACTCCGGAATTGTTGCGTTAACACCTTGAGGTTTCCCATTGGTTATAGCCCGNNGGTTTGGCGGGTAATTTACGTTCACCCNAGCTATTGGCNCTTCCCANAGGCATTTTGGGGCGCTTAAGCGGGGTGGAGCCTTAAAANTTCCTTCAAANACGCCCGGGTCTGCGGCGTTGGGTTAANTTTCCTTTGGAGGCCCCCCCGGGGATNTTCTCCGNAAAAGCCCCAAACACGTGGGA]

[+] EMBL AL933546             [AGAATCGCCCGAGGTTANCAACAGCGCTGTTAACGTTATATCCCTACGATGCACTCGAACGCGGGACAGCTTTGCGCACTGTTTACAGCGATCAAAGCAAACGGGTCACAGTCGCGTCTATTCAGCCCTTGGTCGGTAGAGAATATNCCGAGGAAGCTGNGNAAATCATCGGTCATGTCCTCTCGGGTACGACAGGNCTACCGAAGGGTNGTACTCCATTCAACAACACCGGGAACGGTTATTGGCGTACGAATTGTGCTTAAACGTTGCGGGGGATTTGCCACTTGGGACAAGGGGGACTTGTCCACTTGTGCCACCTGGNCAAGTACTCCGGAATTGTTGCGTTAACACCTTGAGGTTTCCCATTGGTTATAGCCCGNNGGTTTGGCGGGTAATTTACGTTCACCCNAGCTATTGGCNCTTCCCANAGGCATTTTGGGGCGCTTAAGCGGGGTGGAGCCTTAAAANTTCCTTCAAANACGCCCGGGTCTGCGGCGTTGGGTTAANTTTCCTTTGGAGGCCCCCCCGGGGATNTTCTCCGNAAAAGCCCCAAACACGTGGGA]




>consensus_6175#1
AGAATCGCCCGAGGTTANCAACAGCGCTGTTAACGTTATATCCCTACGATGCACTCGAAC
GCGGGACAGCTTTGCGCACTGTTTACAGCGATCAAAGCAAACGGGTCACAGTCGCGTCTA
TTCAGCCCTTGGTCGGTAGAGAATATNCCGAGGAAGCTGNGNAAATCATCGGTCATGTCC
TCTCGGGTACGACAGGNCTACCGAAGGGTNGTACTCCATTCAACAACACCGGGAACGGTT
ATTGGCGTACGAATTGTGCTTAAACGTTGCGGGGGATTTGCCACTTGGGACAAGGGGGAC
TTGTCCACTTGTGCCACCTGGNCAAGTACTCCGGAATTGTTGCGTTAACACCTTGAGGTT
TCCCATTGGTTATAGCCCGNNGGTTTGGCGGGTAATTTACGTTCACCCNAGCTATTGGCN
CTTCCCANAGGCATTTTGGGGCGCTTAAGCGGGGTGGAGCCTTAAAANTTCCTTCAAANA
CGCCCGGGTCTGCGGCGTTGGGTTAANTTTCCTTTGGAGGCCCCCCCGGGGATNTTCTCC
GNAAAAGCCCCAAACACGTGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6175#0      CCGCCACCATGCAACAACCCGCAGCCGCCGATGAATCGTTCATCGTTCGTGGCCCTCCAG 60
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      CACCGGCTGATCTTACGCTAGGTGCCCATTCACTCGGTCAACTGTTTCTCAACGTTTTGC 120
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      AGAAAACTCCACACAGCGTTGCGCTTGTAGATGGAGTTACGGGTAGGGAGTATTCGTATC 180
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      ATGAGGTGCTGCAAATTGCCCTACAACTGGCTGCCTATTTGCACGATCACAACATTCAAC 240
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      GCGGTGATGTAGTGGCAATTGTGGCCGAGAACCGATACGAGTACCCGGTCACGGTGATTG 300
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      CCCTGTTCCTGGTTGGGGCGACCGTTGCACTGTTCAATCCCAGCTACACTACACGTGAAC 360
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      TGGTGCATGCCCTAAATGTGGCCCGTCCGAAGCTTGTGTTTGTTTCATCGTTAGCGAGAG 420
consensus_6175#1      ------------------------------------------------------------
                                                                                  

consensus_6175#0      GATCGCTGCTGAAGGCGAGTCAAACGGTCAAACAGCCGCTGTTAAACGTTATCTCC-TAC 479
consensus_6175#1      ----------AGAATCGCCCGAGGTTANCAA-CAGC-GCTGTTAA-CGTTATATCCCTAC 47
                                  *  **    *      *** **** ******** ****** *** ***

consensus_6175#0      GATGCACTCGAACGCGGCACCAGCTTTGCGCACTGTTTACAGCGATCAA-GCAAACGGTT 538
consensus_6175#1      GATGCACTCGAACGCGGGAC-AGCTTTGCGCACTGTTTACAGCGATCAAAGCAAACGGGT 106
                      ***************** ** **************************** ******** *

consensus_6175#0      CACAGTCGCGTCTATTCAGCCCATG-TCGGTAGAGA-TA-GCCGAGGAAG---TGGCAAT 592
consensus_6175#1      CACAGTCGCGTCTATTCAGCCCTTGGTCGGTAGAGAATATNCCGAGGAAGCTGNGNAAAT 166
                      ********************** ** ********** **  *********    *  ***

consensus_6175#0      CATCG-TCATGTCTTCC--GGTACGACAGGCCTACCGAAGGGTG-TACTCATCACACACC 648
consensus_6175#1      CATCGGTCATGTCCTCTCGGGTACGACAGGNCTACCGAAGGGTNGTACTC--CATTCAAC 224
                      ***** ******* **   *********** ************  *****  **  ** *

consensus_6175#0      GGAACGTTATGGCTACGATGGCTAACGTGCGGGATGCACTGGA------CAAGGGACT-G 701
consensus_6175#1      AACAC----CGGGAACGGTTATTGGCGTACGAATTGTGCTTAAACGTTGCGGGGGATTTG 280
                         **     **  *** *   *  *** **   **  **  *      *  **** * *

consensus_6175#0      TCACTGCACTGCAGTCTCGATGTGCTACCCTGGTTCCATGTAGCCGGTGGTATCTCCATG 761
consensus_6175#1      CCACT-TGGGACAAGGGGGACTTG-TCCACTTGTGCCACCTGGNCAAGTACTCCGGAATT 338
                       ****      **     **  ** * * ** ** ***  * * *        *   ** 

consensus_6175#0      CTCAGCTGGCTAGGTGCTAATCTCACCGTGGTGTATCTGCCCCGGTTCGAGCCACGGACC 821
consensus_6175#1      GTTGCGTTAACACCTTGAGGTTTCCCATTGGT-TATAGCCCGNNGGTTTGGCGGGTAATT 397
                       *    *    *  *     * ** *  **** ***   **   * *   **     *  

consensus_6175#0      TACCTTCGCTGTATCGAGCGGTACCGTCCAAGCTTCCTCAACATGGTGCCCCCAATCGTG 881
consensus_6175#1      TACGTTCACCCNAGCTATTGGCNCTTCCCANAG----GCATTTTGGGGCGCTTAAGCGGG 453
                      *** *** *   * * *  **  *   ***        **   *** ** *  ** ** *

consensus_6175#0      GTCNTTCTGGCGAAG--CATCCNGCCGTGCTCGAGTATGAT------------------- 920
consensus_6175#1      GTGGAGCCTTAAAANTTCCTTCAAANACGCCCGGGTCTGCGGCGTTGGGTTAANTTTCCT 513
                      **    *     **   * * *      ** ** ** **                     

consensus_6175#0      --------------------------------------------------
consensus_6175#1      TTGGAGGCCCCCCCGGGGATNTTCTCCGNAAAAGCCCCAAACACGTGGGA 563