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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1560 fasta sequence
[AATCCCCGAGGTNNTAGATGAGTTAAGTTAAATACTTGATTCGTACGCGCTTTTCCTCCGCTCTTTTGTGCAGTGTAGCAGGGGTAATGTAAGAAAATTGGTTTGCAGAGATCCAAAAGTTGCTGTTTTTTTTAAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGTTAGAATTTGATAAAGGAATGTACGAAGAAAGTAAAACACTACTAACTTTGGTTCTAGTAAGGGCAATAGAAGGCAAAACCACCTAGTATAGCTTAATCCTTTTTTGTTCGGTGAGACAAACTCTCTGAATCATAATTTAAATAATAGCCATAAAATACACCTAGCAAGCATTTTTCTTTGTTTTTAGTTCGCAGTTTTGAGCTACAGGAAAGTATCTCAATTGTGAAGGCGTACAAAACCCCCCGAAATACGGCAAAAAGAGGGACAAAGGTGTATAATAGACATAAATGATAATAGCGAGAGGCCAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGATTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTTAAGCGAGAGGGTGAAATAGC-TTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCACACAAACACACCGCAAACAGCGCGTGGTAATGTGTGGTTAAATTGCACACTAAGGCGTTAGTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAACAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAATGTGTGGAATTATGCGAGAAGTGAAAGTGTGTAAGTGTACAATGAAAATGAGCGCCGAACGATCGTGCCGGTGCGTAATGTAATTCAAACAAAAAGGAGTAAAAAGTGTGTAAATCGAAGGGCTTCTAAAGTCCGGGCTTAGCATTAAATAGTAATTAGTGGTTGTAAGTACTCCGCGGGGGGAATGGGGAAATCGAAAAACACTTTGCACGGCGGTAGTGTGTGGTGTAGTAGTTGGTAGTAGTAGTAGTGTGCAAAAGAATGTAGAAACAGCATAACTGGTCAAATGTGTAGCAGTAAAAAGAAAAATGGAAAACAAAGGGTGCAACGTTAACATACTATTGTGTGTGTGTGTGTCGATAAGAAGGAGAAAGGGTTAGTTAAGCAAAGCAAATGGAGGGAATGTAATTTTTTAAAGTACACAACAGAGAGACAGAGAGAGAGGGAGAGTAACACACGTACACATCGACACAACAGCGGAAAAATCAATAGACTCTGTAAGAGAAGCTTTTCGTTCGTTTAGCGCAAGATGAGTGTGTAGTGTCGTTGGTTCTTACTACTCTTACACCGCTCCCCCCCCCACCCCCTTCCCTCTCCCCAAAAAATGCACCCACTTTACTAACTATTGTTAAGCGAAAACTATGCAGGAATAAACAACACACGAAAATGTAATAAAAATACATCTTGAGTAAACACACAAATTCGTTGGAAGCAAGAGGA]
[+] EMBL AL933538 [AATCCCCGAGGTNNTAGATGAGTTAAGTTAAATACTTGATTCGTACGCGCTTTTCCTCCGCTCTTTTGTGCAGTGTAGCAGGGGTAATGTAAGAAAATTGGTTTGCAGAGATCCAAAAGTTGCTGTTTTTTTTAAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGTTAGAATTTGATAAAGGAATGTACGAAGAAAGTAAAACACTACTAACTTTGGTTCTAGTAAGGGCAATAGAAGGCAAAACCACCTAGTATAGCTTAATCCTTTTTTGTTCGGTGAGACAAACTCTCTGAATCATAATTTAAATAATAGCCATAAAATACACCTAGCAAGCATTTTTCTTTGTTTTTAGTTCGCAGTTTTGAGCTACAGGAAAGTATCTCAATTGTGAAGGCGTACAAAACCCCCCGAAATACGGCAAAAAGAGGGACAAAGGTGTATAATAGACATAAATGATAATAGCGAGAGGCCAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGATTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTT ]
[+] EMBL BM602934 [ ccgGGCCAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGATTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTTAAGCGAGAGGGTGAAATAGC TTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCACACAAACACACCGCAAACAGCGCGTGGTAATGTGTGGTTAAATTGCACACTAAGGCGTTAGTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAACAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAATGTGTGGAATTATGCGAGAAGTGAAAGTGTGTAAGTGTACAATGAAAATGAGCGCCGAACGATCGTGCCGGTGCGTAATGTAATTCAAACAAAAAGGAGTAAAAAGTGTGTAAATCGAAGGGCTTCTAAAGTCCGGGCTTAGCATTAAATAGTAATTAGTGGTTGTAAGTACTCCGCGGGGGGAATGGGGAAATCGAAAAACACTTTGCACG ]
[+] EMBL BX615301 [ TTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTTAAGCGAGAGGGTGATATAGCTTTTTTTTTTGGTTTGGTTTAAAGCGCAGCAAACCCACACAAACACACCTCAAACAGCGCGTGGTAATGTATGGTTAAATTGCACACTAAGGCGTTAGTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAACAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGT ]
[+] EMBL BX627067 [ GTAATTAGTGGTTGTAAGTACTCCGCGGGGGGAATGGGGAAATCGAAAAACACTTTGCACGGCGGTAGTGTGTGGTGTAGTAGTTGGTAGTAGTAGTAGTGTGCAAAAGAATGTAGAAACAGCATAACTGGTCAAATGTGTAGCAGTAAAAAGAAAAATGGAAAACAAAGGGTGCAACGTTAACATACTATTGTGTGTGTGTGTGTCGATAAGAAGGAGAAAGGGTTAGTTAAGCAAAGCAAATGGAGGGAATGTAATTTTTTAAAGTACACAACAGAGAGACAGAGAGAGAGGGAGAGTAACACACGTACACATCGACACAACAGCGGAAAAATCAATAGACTCTGTAAGAGAAGCTTTTCGTTCGTTTAGCGCAAGATGAGTGTGTAGTGTCGTTGGTTCTTACTACTCTTACACCGCTCCCCCCCCCACCCCCTTCCCTCTCCCCAAAAAATGCACCCACTTTACTAACTATTGTTAAGCGAAAACTATGCAGGAATAAACAACACACGAAAATGTAATAAAAATACATCTTGAGTAAACACACAAATTCGTTGGAAGCAAGAGGA]
consensusID : consensus_6177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[ATGATAATAGCGAGAGGCCAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGATTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTTAAGCGAGAGGGTGATATAGCTTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCACACAAACACACCGCAAACAGCACGTGGTAGTGTGTGGTTAGATTGCACACTAAGGCGTTAGTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAACAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAATGTGTGGAATTATGCGGAAAAAAAGGAAAGAAAGAGAGCACATTTAGTAGCTGTTAGATGAGTTAAGTTAAATACTTGATTTCGTACGCGCTTTTCCTCCGCTCTTTTGTGCAGTGTAGCAGGGTAATGTAAGAAAATTGGTTTGCAGAGATCCAAAAGTTGCTGTTTTTTTTAAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGTTAGAATTTGATAAAGGAATGTACGAAGAAAGTAAAACACTACTAACTTTGGTTCTAGTAAGGGCAATAGAAGGCAAAACCACCTAGTATAGCTTAATCC]
[+] EMBL BX624979 [ATGATAATAGCGAGAGGCCAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGATTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGATTTTAAGCGAGAGGGTGATATAGCTTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCACACAAACACACCGCAAACAGCACGTGGTAGTGTGTGGTTAGATTGCACACTAAGGCGTTAGTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAACAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAATGTGTGGAATTATGCGGAAAAAAAGGAAAGAAAGAGAGCACATTTAGTAGCTGTTAGATGAGTTAAGTTAAATACTTGATTTCGTACGCGCTTTTCCTCCGCTCTTTTGTGCAGTGTAGCAGGGTAATGTAAGAAAATTGGTTTGCAGAGATCCAAAAGTTGCTGTTTTTTTTAAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGTTAGAATTTGATAAAGGAATGTACGAAGAAAGTAAAACACTACTAACTTTGGTTCTAGTAAGGGCAATAGAAGGCAAAACCACCTAGTATAGCTTAATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6177#0 AATCCCCGAGGTNNTAGATGAGTTAAGTTAAATACTTGATTCGTACGCGCTTTTCCTCCG 60
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 CTCTTTTGTGCAGTGTAGCAGGGGTAATGTAAGAAAATTGGTTTGCAGAGATCCAAAAGT 120
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 TGCTGTTTTTTTTAAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGTTAGAA 180
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 TTTGATAAAGGAATGTACGAAGAAAGTAAAACACTACTAACTTTGGTTCTAGTAAGGGCA 240
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 ATAGAAGGCAAAACCACCTAGTATAGCTTAATCCTTTTTTGTTCGGTGAGACAAACTCTC 300
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 TGAATCATAATTTAAATAATAGCCATAAAATACACCTAGCAAGCATTTTTCTTTGTTTTT 360
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 AGTTCGCAGTTTTGAGCTACAGGAAAGTATCTCAATTGTGAAGGCGTACAAAACCCCCCG 420
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 AAATACGGCAAAAAGAGGGACAAAGGTGTATAATAGACATAAATGATAATAGCGAGAGGC 480
consensus_6177#1 ------------------------------------------ATGATAATAGCGAGAGGC 18
******************
consensus_6177#0 CAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGA 540
consensus_6177#1 CAGCGAAAGAAGGAGAGAGGTAATAGAGTGTAGCGAAACAAAATAACACTTAGATTTTGA 78
************************************************************
consensus_6177#0 TTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGA 600
consensus_6177#1 TTGGGTTTGATGTAATATTGTTTTCTTGATTCTGCTTAGTTTAAGGAAGGATTTGTATGA 138
************************************************************
consensus_6177#0 TTTTAAGCGAGAGGGTGAAATAGCTTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCA 660
consensus_6177#1 TTTTAAGCGAGAGGGTGATATAGCTTTTTTTTCGGTTTGGTTTAAAGCGCAGCAAACCCA 198
****************** *****************************************
consensus_6177#0 CACAAACACACCGCAAACAGCGCGTGGTAATGTGTGGTTAAATTGCACACTAAGGCGTTA 720
consensus_6177#1 CACAAACACACCGCAAACAGCACGTGGTAGTGTGTGGTTAGATTGCACACTAAGGCGTTA 258
********************* ******* ********** *******************
consensus_6177#0 GTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAA 780
consensus_6177#1 GTGACTAAGATTTCTTTTATCCGCTGCTTAGAAAAGGGCACAAACACAGTAAAAACAAAA 318
************************************************************
consensus_6177#0 CAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAA 840
consensus_6177#1 CAAAAAAAGCGCAACCTCTCCAGGTACGGTGTGTAGTGGTGGAATAAGAAGATGTGTAAA 378
************************************************************
consensus_6177#0 TGTGTGGAATTATGCGAGAAGTGAAAGTGTGTAAGTGTACAATGAAAATGAGCGCCGAAC 900
consensus_6177#1 TGTGTGGAATTATGCG-GAAAAAAAGGAAAGAAAGAGAGCACATTTAGTAGCTGTTAGAT 437
**************** *** ** * * *** * ** * * * *
consensus_6177#0 GATCGTGCCGGTGCGTAATGTAATTCAAACAAAAAGGAGTAAAAAGTGTGTAAATCGAAG 960
consensus_6177#1 GA--GTTAAGTTAAATACTTGATTTCGTACGCGCTTTTCCTCCGCTCTTTTGTGCAGTGT 495
** ** * * ** * * *** ** * * *
consensus_6177#0 GGCTTC-TAAAGTCCGGGCTTAGCATTAAATAGTAATTAGTGGTTGTAAGTACTCCGCGG 1019
consensus_6177#1 AGCAGGGTAATGTAAGAAAATTGGTTTGCAGAG-ATCCAAAAGTTGCTGTTTTTTTT--- 551
** *** ** * * * ** * ** * * **** * *
consensus_6177#0 GGGGAATGGGGAAATCGAAAAACACTTTGCACGGCGGTAGTGTGTGGTGTAGTAGTTGGT 1079
consensus_6177#1 ---AAATAACGAAATGAGGGTAAAAAGCAGATACATGCATTGGGT----TAGAATTTGAT 604
*** ***** * * * * * ** ** *** * *** *
consensus_6177#0 AGTAGTAGTAGTGTGCAAAAGAATGTAGAAACAGCATAACTGGTCAAATGTGTAGCAGTA 1139
consensus_6177#1 AA----AGGAATGTACGAAGAAA-GTAAAA----CACTACTAACTTTGGTTCTAGTAAGG 655
* ** * *** * ** ** *** ** ** *** * *** *
consensus_6177#0 AAAAGAAAAATGGAAAACAAAGGGTGCAACGTTAACATACTATTGTGTGTGTGTGTGTCG 1199
consensus_6177#1 GCAATAGAAGGCAAAACCACCTAGTATAGC-TTAATCC---------------------- 692
** * ** *** ** ** * * ****
consensus_6177#0 ATAAGAAGGAGAAAGGGTTAGTTAAGCAAAGCAAATGGAGGGAATGTAATTTTTTAAAGT 1259
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 ACACAACAGAGAGACAGAGAGAGAGGGAGAGTAACACACGTACACATCGACACAACAGCG 1319
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 GAAAAATCAATAGACTCTGTAAGAGAAGCTTTTCGTTCGTTTAGCGCAAGATGAGTGTGT 1379
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 AGTGTCGTTGGTTCTTACTACTCTTACACCGCTCCCCCCCCCACCCCCTTCCCTCTCCCC 1439
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 AAAAAATGCACCCACTTTACTAACTATTGTTAAGCGAAAACTATGCAGGAATAAACAACA 1499
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 CACGAAAATGTAATAAAAATACATCTTGAGTAAACACACAAATTCGTTGGAAGCAAGAGG 1559
consensus_6177#1 ------------------------------------------------------------
consensus_6177#0 A 1560
consensus_6177#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||